PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_126040_zsog.t1
Common NameSOVF_126040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 318aa    MW: 34914.4 Da    PI: 8.5914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_126040_zsog.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed +l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  Sp_126040_zsog.t1 14 KGAWTKDEDHRLIDYIRLHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding58.81.2e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Sp_126040_zsog.t1  67 RGNFTEEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.296961IPR017930Myb domain
SMARTSM007178.4E-121363IPR001005SANT/Myb domain
SuperFamilySSF466895.39E-2913108IPR009057Homeodomain-like
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001673.30E-101661No hitNo description
PROSITE profilePS5129429.29862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2865116IPR009057Homeodomain-like
SMARTSM007176.8E-1866114IPR001005SANT/Myb domain
PfamPF002494.6E-1767111IPR001005SANT/Myb domain
CDDcd001678.40E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKD EDHRLIDYIR LHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDQLIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLIGRG  120
LDPQTHRPFN SPTANETAAA LTTADVKKSP ECLGCVKAVN NPPIITQFGA VSQTIDFNNS  180
YPDVTSTKVK SDSCNSGTTT DDGPTYRVPG QTNMGQEDIN LELTIGLSKF QGEARNSTAS  240
SAESRVVGLN SSPSPFGLFY EPMKVEMVGS NKGQNGEICS CSELGFEMNS KGQGGCCSNC  300
QRKSGYLISR YIGPLLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141167108B-MYB
1h8a_C8e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847942.10.0transcription repressor MYB6-like
SwissprotQ388514e-89MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0K9QYS80.0A0A0K9QYS8_SPIOL; Uncharacterized protein
STRINGXP_010680433.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-91myb domain protein 6