PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_124250_yknj.t1
Common NameSOVF_124250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 332aa    MW: 36562.6 Da    PI: 6.9995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_124250_yknj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31145198255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH++F++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sp_124250_yknj.t1 145 PRMRWTSTLHAHFIHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-15142198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27143198IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-24145198IPR006447Myb domain, plants
PfamPF002494.2E-7146197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDLSLQISPP SITLTNEKDN YGASSELNEL MSTKKVTFYS DRGSTTTTTE SGTSADGSEI  60
SYNEIDTNNN INGPMLSLGF DHMSRFDGLA PFRGFNGNNN SNSSSDCYNL HHYTQFNHQP  120
QIYGRDFKRN SRSSTSGGKR SVRAPRMRWT STLHAHFIHA VQLLGGHERA TPKSVLELMN  180
VKDLTLAHVK SHLQMYRTVK TTDKATLSSS GLALHQEDMM GSNQFSSEKA DSNYPSYSLN  240
PSSPTPPPPL LPKTNLGPWL SSLHVADDGS PLIRRLYSHS KVDGCDNVLN LSSMEQEQLG  300
SAVCFSSADQ SLLNLEFTLG RPSSNDMNLL KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-17146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17146200458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856260.10.0probable transcription factor KAN4
TrEMBLA0A0K9QZC80.0A0A0K9QZC8_SPIOL; Uncharacterized protein
STRINGXP_010684003.13e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.15e-56G2-like family protein