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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sp_123140_ronx.t2 | ||||||||
| Common Name | SOVF_123140 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | C3H | ||||||||
| Protein Properties | Length: 1792aa MW: 196127 Da PI: 6.5955 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 21.5 | 4.2e-07 | 1771 | 1792 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
+ C+ f+++G+Ck G++Ck+ H+
Sp_123140_ronx.t2 1771 RVCK-FYESGYCKKGASCKYLHP 1792
7899.8999*************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 4.19E-8 | 60 | 134 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 5.9E-8 | 82 | 140 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SMART | SM00249 | 1.0E-5 | 89 | 135 | IPR001965 | Zinc finger, PHD-type |
| CDD | cd15568 | 5.91E-18 | 89 | 134 | No hit | No description |
| PROSITE pattern | PS01359 | 0 | 90 | 150 | IPR019786 | Zinc finger, PHD-type, conserved site |
| SuperFamily | SSF47592 | 4.14E-21 | 306 | 384 | IPR003121 | SWIB/MDM2 domain |
| Gene3D | G3DSA:1.10.245.10 | 6.8E-26 | 307 | 385 | IPR003121 | SWIB/MDM2 domain |
| Pfam | PF02201 | 1.0E-14 | 309 | 382 | IPR003121 | SWIB/MDM2 domain |
| SMART | SM00151 | 3.2E-4 | 309 | 387 | IPR019835 | SWIB domain |
| SMART | SM00719 | 5.0E-37 | 442 | 552 | IPR004343 | Plus-3 domain |
| PROSITE profile | PS51360 | 26.333 | 442 | 575 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF159042 | 7.32E-28 | 443 | 571 | IPR004343 | Plus-3 domain |
| Pfam | PF03126 | 7.7E-21 | 447 | 550 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF55277 | 1.57E-16 | 769 | 828 | IPR003169 | GYF domain |
| PROSITE profile | PS50829 | 14.129 | 772 | 826 | IPR003169 | GYF domain |
| CDD | cd00072 | 1.44E-13 | 772 | 826 | No hit | No description |
| SMART | SM00444 | 1.4E-11 | 773 | 828 | IPR003169 | GYF domain |
| Gene3D | G3DSA:3.30.1490.40 | 2.4E-17 | 774 | 829 | IPR003169 | GYF domain |
| Pfam | PF02213 | 3.0E-10 | 774 | 814 | IPR003169 | GYF domain |
| PRINTS | PR01217 | 5.5E-11 | 1438 | 1454 | No hit | No description |
| PRINTS | PR01217 | 5.5E-11 | 1471 | 1483 | No hit | No description |
| PRINTS | PR01217 | 5.5E-11 | 1483 | 1504 | No hit | No description |
| PRINTS | PR01217 | 5.5E-11 | 1504 | 1520 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 1765 | 1791 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.906 | 1767 | 1792 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.6E-5 | 1770 | 1792 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.37E-5 | 1771 | 1791 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1792 aa Download sequence Send to blast |
MAETRLTRIT VQALPSVDKP VLSPASITVD RSHDIVQLPD SQLPEVPMEE VVVVKKRRGR 60 PPRNIGGAAA GGAPPIPVAK KSKKEDEDVC FICFDGGNLV LCDYRDCPKA YHPACVKRDE 120 SFFRRSIRWN CGWHLCNFCQ KNALFMCYTC PYSLCKRCVK QADVLCIRRN KGFCRTCMTT 180 IKLVENIPQE TKEQVQVDFD DTTSWEYLFK VYWIYLKEKE ALTLDELTRA TNPWKVSGLE 240 NNNFQQKRAE TCPSNVSELS SSNVQLETNN LKRRKTRRQQ QLLNLNSQNV DNSDGNKVTG 300 LHAAADWASK ELLDFVAHMK NGETSVLSQF DVQALLLDYI RKNNLRDPRQ KCQIICDRRL 360 EDLFGKERVG HFEMLKLLEY HFKEESRTNG VIRGAAVDPL ASQLENEGIS DDFQIPSRET 420 RRQSRKKAEE KGRQIKLDSY AAIDVHNINL IYLKRSLLEN LMVDAENFHD KVVGSVVRIR 480 ISSNDQKQDM HRLVRIIGTS KETEPYKIGV KTESFMLKIL NLNKIEDVAI GAISDQEFSE 540 DECRRLRQSI KLGLVERMTV GEIQEKAVSL QTMRVNDWLE TEIRRLNHLR DRASEMGHRK 600 ELRECVEKIE LLKAPEERLR RIQEIPDVHA DPRMDPSYGS DDDSDGSMTP KYSNSNARVE 660 LISPVRSGDM LKDDRTIKPI KISFANGERR RKNSAKFHVG KVESTTRPLE PSHNSEKVDA 720 ASKIPEEDFN SRADFVVVSG DRGVTKPGFV SDSVTTALSS RMLLVSDMNE LEKIWHYRDP 780 SGKVQGPFCM LQLRKWCSKD FFPTDLRVWK INESLDRSIL LTDALKKQQS NEPETEPDVE 840 QLSCSQSYCG VESDDRKVNP LEEFSSNSDA PFVAYNPNEE GSNKNLTDVN ASSDAYENQG 900 GIDQPSGFDI KARLIESLFD TEEPSSTATP TGSSETMQVP LTFESSHPST STSKSGNPDL 960 ECQVVVKSQP SSPNAGQPDS EICWGTSNGF GTSDLPCVTQ KSNPPDLNGL NLEIHVASDV 1020 SRDFDATCGT GSSPTKSSHL PNLTPKAENK DVNDHHDTIN KNLVVSGGYE QDSGTDAVSG 1080 GICLSMLPIA AVKVEKNDGL KPQTIENRQS ISSNVPGRDK EAIWSSTISA ETDLSLLANN 1140 HLNTESMKAH AIENNKHYNN TSSVPELVSG TSWNPISGGI VFSDPPKLES NTTSTTWTSS 1200 SISGGMRFPD LPTTSLKLGN KSSEITNIRG QDSCINWSTS SSLVGEEVHL PDDVANEWGP 1260 YSTVVHAKPD AIATPASQSC QLLNLHCDIS SWQPIELSTL GDESVSDLLS EVEAMESLRG 1320 MSSPTSRMNC GPDSIDSVDD DCFSPLGGLS PNLDPGKNNN MGFHIQQPSI NHHHQQPHHG 1380 AFTVMRDLER TSSCILSTTT TTTTTGSVQV EAADKQTIAL MPFLDFVSKG PVSAVLLPPV 1440 GAAVSSSHSP PPPPPEASLP LPLFPPPSLS SLPQVSLPSP SPPPASLPLP PPPPSLQLPL 1500 PPPPPPPPPP PASLPSPPPP PPPSLPSPPQ SLPPPPASLP SPPPPPPPSL PSPPQSLPPP 1560 PPSLPSPPPP PPEEKPPSPP QKRPSALSLN SPSSPREEGE VDPASLSVHH PKPRHHRQPS 1620 PKTPTIKVAP SADTRKQGSE NTRTNWEPPG HPGGKLSGNT GSILGTPNMH WHISGPGIPA 1680 VNTHWSTSVV SQGTRGSSQT SPRYNNHSGG GGRHSGSKDR SNNHQHGGVD SGVSKSSRPN 1740 SWSRQSSFGG GGGGGGGPSR PLPPPPRGGP RVCKFYESGY CKKGASCKYL HP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2naa_A | 9e-14 | 85 | 157 | 4 | 73 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
| 4gnd_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnd_C | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gne_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnf_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_D | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021850116.1 | 0.0 | zinc finger CCCH domain-containing protein 44 isoform X2 | ||||
| TrEMBL | A0A0K9R1R7 | 0.0 | A0A0K9R1R7_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010680076.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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