PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_122760_zefi.t1 | ||||||||
Common Name | SOVF_122760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 435aa MW: 47847.3 Da PI: 6.6245 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l+++vk++G g+W+++ r g+ R++k+c++rw ++l Sp_122760_zefi.t1 38 KGPWSAAEDTVLIEYVKKHGEGNWNAVQRNTGLQRCGKSCRLRWANHL 85 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.4e-16 | 91 | 134 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ E+ l++d++ +lG++ W++I+++++ gRt++++k++w++ Sp_122760_zefi.t1 91 KGAFSSVEERLIIDLHSKLGNK-WARISAHLP-GRTDNEIKNYWNT 134 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.1 | 33 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 36 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-29 | 37 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 38 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-11 | 40 | 85 | No hit | No description |
PROSITE profile | PS51294 | 24.549 | 86 | 140 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 89 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 91 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.01E-11 | 93 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MILTTSKGGG VGVGREVVSG GATDGGGVEG GMSSILKKGP WSAAEDTVLI EYVKKHGEGN 60 WNAVQRNTGL QRCGKSCRLR WANHLRPNLK KGAFSSVEER LIIDLHSKLG NKWARISAHL 120 PGRTDNEIKN YWNTRVKRRI RQGLSLYPND LPTPPPQQPP LHHHHQSLPL SLSLPKTPPP 180 TLSLFNPVSL ASPVFSLNPP PPFLPSHHHS LKRCSTSSSN SFMGNPIFSS SQVGPLHISS 240 AGFGFDPGRE GFGFCSPGFF ELPSNQFSQN VSGNNYIKME LDNEVKVNPN LGRTNSGLLD 300 DLLQESHVKV SLKREREDDC GLQWDVSSSE NSSTGIKKEE LEDEEHKLNF NSQDLSNILE 360 LIPTLVQAPK WCNNGSAESS APQSSAVSID DNYNGFDDQM PQPPSFTAVN NTSYEDDDGT 420 WNPECYNWDN LPRIC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 36 | 140 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 134 | 140 | RVKRRIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021863376.1 | 0.0 | transcription factor MYB97-like | ||||
TrEMBL | A0A0K9R1H8 | 0.0 | A0A0K9R1H8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010666224.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06100.1 | 2e-63 | myb domain protein 33 |