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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_121780_ueai.t1 | ||||||||
Common Name | SOVF_121780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 93aa MW: 10410.7 Da PI: 8.5328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00015 | 20 | 60 | 14 | 54 |
HHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 d+i + +L++l+P+ a+ + s +L++++ YI++L Sp_121780_ueai.t1 20 DQIADLVRKLQQLVPEiH--ARRTSdKSANRVLQETCTYIRNL 60 57888889********77..444444555679*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.05E-6 | 20 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-7 | 20 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MSSRRSRSRQ SGGVSSISDD QIADLVRKLQ QLVPEIHARR TSDKSANRVL QETCTYIRNL 60 HREVDDLSDR LAELLASTDS DSAQAAIIRS LLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844581.1 | 5e-59 | transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 4e-36 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A0K9R085 | 1e-57 | A0A0K9R085_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681766.1 | 3e-44 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 4e-35 | bHLH family protein |