PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121600_fyyw.t1
Common NameSOVF_121600
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 327aa    MW: 35566.5 Da    PI: 8.7721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121600_fyyw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08652345
                       SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                       +W+ eE++ + +a++ +  +     +W+++a+ +  ++t +++k ++ 
  Sp_121600_fyyw.t1  6 SWSREEEKAFENAIATYSIDqsnedDWDKVAAVVT-TKTIEEIKQHYE 52
                       6*********************************9.**********95 PP
2Myb_DNA-binding40.37.2e-13145189347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Sp_121600_fyyw.t1 145 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVITRTPTQVASHAQKY 189
                        7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.82159IPR017884SANT domain
SMARTSM007171.2E-6357IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-10661IPR009057Homeodomain-like
PfamPF002492.5E-6652IPR001005SANT/Myb domain
CDDcd001676.05E-8655No hitNo description
Gene3DG3DSA:1.10.10.603.8E-4657IPR009057Homeodomain-like
PROSITE profilePS5129417.466138194IPR017930Myb domain
SuperFamilySSF466892.47E-17139195IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17141192IPR006447Myb domain, plants
SMARTSM007171.3E-10142192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11143188IPR009057Homeodomain-like
CDDcd001675.88E-10145190No hitNo description
PfamPF002491.9E-11145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MPNLASWSRE EEKAFENAIA TYSIDQSNED DWDKVAAVVT TKTIEEIKQH YELLVEDVGA  60
IEAGKVPLPK YASEETNHHN NSSNNNGTLL STSTTSKDDH SPSFSKEQKG NSNQGNGYSA  120
FGPSSMGNST KASSKLEQER KKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVITRTPT  180
QVASHAQKYF IRLNSMNRDR RRSSIHDITS VNGGGLSPNQ VPITGQQNNN PAAPAVGTAA  240
AAAAANKHRA PPNVNVNMAA AGIGMYGTQM GHPISAPPPP PHHMVSAVGT PVMLPPPGHP  300
HHHHHHHHPP HYAVPVAYPV PPPPMHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-157731175RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854462.10.0transcription factor MYBS1-like
TrEMBLA0A0K9R1X80.0A0A0K9R1X8_SPIOL; Uncharacterized protein
STRINGXP_010673224.11e-164(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-64MYB family protein