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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_121000_ftug.t1 | ||||||||
Common Name | SOVF_121000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27145.6 Da PI: 6.778 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 86 | 132 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 rE++RRd++N++f+eL +l + + +K +Ka+iL+ A++ +k L Sp_121000_ftug.t1 86 ACREKQRRDHLNNRFFELSAMLESgT---TTPKSDKAAILTDAIRQVKLL 132 579*********************66...***************977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.341 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-12 | 85 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-9 | 86 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-9 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.32E-10 | 88 | 135 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 88 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00372 | 127 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MESLEGVEFD LNWVCSLLDD IPTTCCDSTT RFDVPLPSIP RLNSFPSSTS HSLDTQDSSE 60 GLDGSEDCCR KRVRVGSVAA SSSFKACREK QRRDHLNNRF FELSAMLESG TTTPKSDKAA 120 ILTDAIRQVK LLREESSSLT RQNAELKQKN NELKAEKKAL RAEKHSLVSE KEKMEQRIKE 180 LDTRPNLQFH PSSVPTPYAM PYQSVGGKLM PLVNYSSVPF WQFVPQAAFD TSQDHVLHPP 240 VA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866561.1 | 0.0 | transcription factor ILR3-like | ||||
TrEMBL | A0A0K9R0D7 | 1e-179 | A0A0K9R0D7_SPIOL; Uncharacterized protein | ||||
STRING | XP_008224874.1 | 1e-67 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-43 | bHLH family protein |