PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_120700_aoao.t3
Common NameSOVF_120700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 291aa    MW: 32189.6 Da    PI: 4.9566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_120700_aoao.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.9e-184594255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       r +h+e E+rRR++iN++f+ L+el+P++    ++K +Ka+ L +++eYI+ Lq
  Sp_120700_aoao.t3 45 RSKHSETEQRRRSKINERFQILKELIPPN----DQKRDKASLLLEVIEYIQFLQ 94
                       899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-1940111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-2141113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-184198No hitNo description
PROSITE profilePS5088817.6384393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-154594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-144999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVRTVRPNYP QQEDEEDDAE DVATGTDTSS HREGKSADQK PSNYRSKHSE TEQRRRSKIN  60
ERFQILKELI PPNDQKRDKA SLLLEVIEYI QFLQDKIQVY EGPYQQQAWS QEATKLIPWR  120
ANHGPVDNFA NHSQAMKNGF LDENTSVQSM TAIQGAVESE FSGEFAYRVD HHPAGPVNPV  180
VPLNVPLAPC SFPPARAILP IETVASHPHG SSGADGSIIL TEERTFERGS SSVSDVYSQG  240
LLKRLTQELQ TYGVDLSQAN ISIQLDVGKG GNSGSNAIGP STEIAFDIML K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736897.11e-173transcription factor BIM2-like
TrEMBLA0A0K9R0G10.0A0A0K9R0G1_SPIOL; Uncharacterized protein
STRINGXP_010694243.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-55BES1-interacting Myc-like protein 2