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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_120700_aoao.t2 | ||||||||
Common Name | SOVF_120700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35009.5 Da PI: 4.9984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 1e-17 | 45 | 94 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L+el+P++ ++K +Ka+ L +++eYI+ Lq Sp_120700_aoao.t2 45 RSKHSETEQRRRSKINERFQILKELIPPN----DQKRDKASLLLEVIEYIQFLQ 94 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.18E-19 | 40 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-17 | 41 | 98 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-21 | 41 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.638 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-15 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-14 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MVRTVRPNYP QQEDEEDDAE DVATGTDTSS HREGKSADQK PSNYRSKHSE TEQRRRSKIN 60 ERFQILKELI PPNDQKRDKA SLLLEVIEYI QFLQDKIQVY EGPYQQQAWS QEATKLIPWR 120 ANHGPVDNFA NHSQAMKNGF LDENTSVQSM TAIQGAVESE FSGEFAYRVD HHPAGPVNPV 180 VPLNVPLAPC SFPPARAILP IETVASHPHG SSGADGSIIL TEERTFERGS SSVSDVYSQG 240 LLKRLTQELQ TYGVDLSQAN ISIQLDVGKG GNSGSNAIGP STEDVDSRSP NNQPVSPAVE 300 VSTKDSIQTA KRLRTGES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021736897.1 | 0.0 | transcription factor BIM2-like | ||||
TrEMBL | A0A0K9R0G2 | 0.0 | A0A0K9R0G2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694243.1 | 1e-161 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-54 | BES1-interacting Myc-like protein 2 |