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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_120700_aoao.t1 | ||||||||
Common Name | SOVF_120700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 34880.4 Da PI: 5.1043 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 1e-17 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L+el+P++ ++K +Ka+ L +++eYI+ Lq Sp_120700_aoao.t1 44 RSKHSETEQRRRSKINERFQILKELIPPN----DQKRDKASLLLEVIEYIQFLQ 93 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.16E-19 | 39 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-21 | 40 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-17 | 40 | 97 | No hit | No description |
PROSITE profile | PS50888 | 17.638 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-15 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-14 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MVRTVRPNYP QQEDEEDDAE DVATGTDTSS HRGKSADQKP SNYRSKHSET EQRRRSKINE 60 RFQILKELIP PNDQKRDKAS LLLEVIEYIQ FLQDKIQVYE GPYQQQAWSQ EATKLIPWRA 120 NHGPVDNFAN HSQAMKNGFL DENTSVQSMT AIQGAVESEF SGEFAYRVDH HPAGPVNPVV 180 PLNVPLAPCS FPPARAILPI ETVASHPHGS SGADGSIILT EERTFERGSS SVSDVYSQGL 240 LKRLTQELQT YGVDLSQANI SIQLDVGKGG NSGSNAIGPS TEDVDSRSPN NQPVSPAVEV 300 STKDSIQTAK RLRTGES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021736897.1 | 0.0 | transcription factor BIM2-like | ||||
TrEMBL | A0A0K9R240 | 0.0 | A0A0K9R240_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694243.1 | 1e-160 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-54 | BES1-interacting Myc-like protein 2 |