PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_119480_cxqc.t2
Common NameSOVF_119480
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 557aa    MW: 60873.8 Da    PI: 7.0783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_119480_cxqc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.13.2e-18255304255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR +iN++f+ Lrel+P++    ++K +Ka+ L +++eYI++Lq
  Sp_119480_cxqc.t2 255 RSKHSATEQRRRCKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 304
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.9E-23251325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.641253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18254330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-15255307No hitNo description
PfamPF000109.3E-16255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MELPQSRPFG ATQGRKATHD FLSLYNHPSL QQDPRSSSHG GLLKTHNFLQ PLEGEEKTGP  60
KEDNMVDINV KPPPAAPPTS VVEHVLPGGI GTYSISHISY FNPRVPKSEE NIYSVAPVTS  120
NDKNDDNSNC SSYTGSGFTL WDESAVRKGN TGKENLGDVN VVKESTIKMG QWPLDRPQSS  180
SNHRSSVSPL SSSQVLIQKS QSFMEMIKSA KGPHSMEEEV EEDLSLKKES GSSQKGELRV  240
NVGGKSNDQK ATTPRSKHSA TEQRRRCKIN DRFQMLRELI PHSDQKRDKA SFLLEVIEYI  300
QYLQEKVNRY EGSYPGWNSE PPKLNPWRNS HGVTESFVDQ SRVVNNGITS PGLMFGAKLD  360
EKATPVSLDA PHNPQNAAEP IMANAINVKA VDQQPGMITK AESISSQLQR DIQAPIINSC  420
GIPQPPVRLP SDGGKASFPQ LELWQSRTCE SEHSVAADKL KEQELALEGG TINISSLYSQ  480
GLLNTLTRAL QSSGLDLSQA SISVQVDIGK RANSRQNSQE AAGKSAEAPA GNQSLLHARI  540
DSTSSESDHA VKRLKTG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855279.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A0K9R2X10.0A0A0K9R2X1_SPIOL; Uncharacterized protein
STRINGXP_010678382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-97bHLH family protein