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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_119480_cxqc.t1 | ||||||||
Common Name | SOVF_119480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 61001.9 Da PI: 7.0783 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.1 | 3.2e-18 | 257 | 306 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lrel+P++ ++K +Ka+ L +++eYI++Lq Sp_119480_cxqc.t1 257 RSKHSATEQRRRCKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 306 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-23 | 253 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.641 | 255 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-18 | 256 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-16 | 257 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-15 | 257 | 309 | No hit | No description |
SMART | SM00353 | 6.5E-13 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MELPQSRPFG ATQGRKATHD FLSLYNHPSL QQDPRSSSHG AGGLLKTHNF LQPLEGEEKT 60 GPKEDNMVDI NVKPPPAAPP TSVVEHVLPG GIGTYSISHI SYFNPRVPKS EENIYSVAPV 120 TSNDKNDDNS NCSSYTGSGF TLWDESAVRK GNTGKENLGD VNVVKESTIK MGQWPLDRPQ 180 SSSNHRSSVS PLSSSQVLIQ KSQSFMEMIK SAKGPHSMEE EVEEDLSLKK ESGSSQKGEL 240 RVNVGGKSND QKATTPRSKH SATEQRRRCK INDRFQMLRE LIPHSDQKRD KASFLLEVIE 300 YIQYLQEKVN RYEGSYPGWN SEPPKLNPWR NSHGVTESFV DQSRVVNNGI TSPGLMFGAK 360 LDEKATPVSL DAPHNPQNAA EPIMANAINV KAVDQQPGMI TKAESISSQL QRDIQAPIIN 420 SCGIPQPPVR LPSDGGKASF PQLELWQSRT CESEHSVAAD KLKEQELALE GGTINISSLY 480 SQGLLNTLTR ALQSSGLDLS QASISVQVDI GKRANSRQNS QEAAGKSAEA PAGNQSLLHA 540 RIDSTSSESD HAVKRLKTG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855278.1 | 0.0 | transcription factor BIM2-like isoform X1 | ||||
TrEMBL | A0A0K9R0V3 | 0.0 | A0A0K9R0V3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678382.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 5e-96 | bHLH family protein |