PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_118740_hmni.t1
Common NameSOVF_118740
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 319aa    MW: 35955.5 Da    PI: 6.2497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_118740_hmni.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11137183455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+ + + f  L +l+P +     kK +K +iL +A++++k+Lq
  Sp_118740_hmni.t1 137 DHILAERKRRETLAQLFISLSTLIPGL-----KKIDKTTILGEAIKHMKHLQ 183
                        6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-14124192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-10132186No hitNo description
PROSITE profilePS5088813.776133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-14137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-9137183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKQAFSTME ELLSAALHGE DLCYPLLGKS NTWYPESQWE LEYDLVDQFI TSPPSYTSND  60
SSEIISHNDF NDDDNNNNDD GGDNASTVKM LKTTPTGVQE PDRQSENNNK EVTKKQVVNG  120
GGGGKRKRKR QESQVQDHIL AERKRRETLA QLFISLSTLI PGLKKIDKTT ILGEAIKHMK  180
HLQEKVNALE TLAAQQKTLK SMVVVKKYQL TVANDDNNDD NDNGSRNNAI NFNNSIPEIQ  240
VKTTDDTLLL KVHCEQQEKI MTKLFDVVVK HHMSVVNCAL IPFKNLAQDI TIVTKMKEGF  300
DLDVKGFVRS IRSILHPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127145RKRQESQVQDHILAERKRR
2141146ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856513.11e-110transcription factor bHLH18-like isoform X1
RefseqXP_021856514.11e-111transcription factor bHLH18-like isoform X2
TrEMBLA0A0K9R2S00.0A0A0K9R2S0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-38bHLH family protein