PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_118730_ygxz.t1 | ||||||||
Common Name | SOVF_118730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 35619.2 Da PI: 5.5649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 123 | 169 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L +l+P + kK +K +iL+ A++++k+Lq Sp_118730_ygxz.t1 123 DHILAERKRRETLAQLFISLSTLIPGL-----KKIDKTSILRGAIKHMKHLQ 169 6899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-14 | 110 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.38E-11 | 117 | 172 | No hit | No description |
PROSITE profile | PS50888 | 14.107 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 123 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-13 | 123 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEKQALSTME ELLSAALHGE DLCYPLLGKS NTWYPESQWE LEYDLVDQFI TSPPSYTSND 60 SSEIISHDDY EFYDNHNNDD GNDNASTVKM LMIENHNNKK VSEKQAVNGG KRKRKRKESQ 120 VQDHILAERK RRETLAQLFI SLSTLIPGLK KIDKTSILRG AIKHMKHLQE RVNVLENLGA 180 QQKNLKSLVV VKKCQLTVDN DDDNNDDNGS FSIIDDNGSS NDAIYLNNSI PEIQVKTTDD 240 TLLLRVHCEQ QKDIMTKLFD VVVKHHMSVA HCAVIPFTNL AIDITIVTQM EDGFSMDVKD 300 FVRSIRYILH PAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | KRKRKRK |
2 | 111 | 116 | RKRKRK |
3 | 111 | 117 | RKRKRKE |
4 | 114 | 131 | KRKESQVQDHILAERKRR |
5 | 127 | 132 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846663.1 | 1e-114 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0K9R141 | 0.0 | A0A0K9R141_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-40 | bHLH family protein |