PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_118730_ygxz.t1
Common NameSOVF_118730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 313aa    MW: 35619.2 Da    PI: 5.5649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_118730_ygxz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11123169455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+ + + f  L +l+P +     kK +K +iL+ A++++k+Lq
  Sp_118730_ygxz.t1 123 DHILAERKRRETLAQLFISLSTLIPGL-----KKIDKTSILRGAIKHMKHLQ 169
                        6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14110177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-11117172No hitNo description
PROSITE profilePS5088814.107119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-13123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEKQALSTME ELLSAALHGE DLCYPLLGKS NTWYPESQWE LEYDLVDQFI TSPPSYTSND  60
SSEIISHDDY EFYDNHNNDD GNDNASTVKM LMIENHNNKK VSEKQAVNGG KRKRKRKESQ  120
VQDHILAERK RRETLAQLFI SLSTLIPGLK KIDKTSILRG AIKHMKHLQE RVNVLENLGA  180
QQKNLKSLVV VKKCQLTVDN DDDNNDDNGS FSIIDDNGSS NDAIYLNNSI PEIQVKTTDD  240
TLLLRVHCEQ QKDIMTKLFD VVVKHHMSVA HCAVIPFTNL AIDITIVTQM EDGFSMDVKD  300
FVRSIRYILH PAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116KRKRKRK
2111116RKRKRK
3111117RKRKRKE
4114131KRKESQVQDHILAERKRR
5127132ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846663.11e-114transcription factor bHLH25-like
TrEMBLA0A0K9R1410.0A0A0K9R141_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-40bHLH family protein