PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_117840_nina.t1 | ||||||||
Common Name | SOVF_117840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bZIP | ||||||||
Protein Properties | Length: 425aa MW: 47180.6 Da PI: 6.6165 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 6.8e-10 | 140 | 180 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Sp_117840_nina.t1 140 KSLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 180 788*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.9E-9 | 136 | 199 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 138 | 182 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.11E-21 | 140 | 191 | No hit | No description |
SuperFamily | SSF57959 | 1.04E-6 | 140 | 183 | No hit | No description |
Pfam | PF00170 | 6.1E-7 | 140 | 180 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 141 | 185 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 143 | 158 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.6E-32 | 223 | 297 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MPSFIPSLPI SNSILTEGNN TSTSRISELG AFEQSLDFRI EDDVDLRNPV FSSLKSSSLT 60 VGADLQFGSF NKLSQPNLAS ASGSHRENWA ESNMADVSPR SDSSSDDTED RNLQFEAGQT 120 NTRTASDSSE RSKEKVTDQK SLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL 180 QRARQQGIFI SNAGDQSHAI GGNGALAFDA EYSRWLEEQN KMINELRTAV NSHASDTELH 240 TVVDNVATHF NDIFRLKGVA AKADVFHILS GMWKTPAERC FMWIGGFRPS ELLKLLVNQL 300 EPLTEQQLVG IYNLQQSSQQ AEEALSQGME ALQQSLAETL ASGTPGPSGS SGNVANYMGQ 360 MAMAMGKLGT LEGFLRQADN LRQQTLQQMH HILTTRQSAR AVLSIHDYFS RLRALSSLWL 420 ARPRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856713.1 | 0.0 | transcription factor TGA2.3-like, partial | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A0K9R181 | 0.0 | A0A0K9R181_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673021.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-137 | bZIP family protein |