PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_117570_tude.t1
Common NameSOVF_117570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 436aa    MW: 48819.2 Da    PI: 7.4396
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_117570_tude.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-3298151255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+
  Sp_117570_tude.t1  98 PRLRWTPDLHLCFVHAVERLGGQERATPKLVLQMMNIKGLSIAHVKSHLQMYRS 151
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-3094152IPR009057Homeodomain-like
PROSITE profilePS5129411.95794154IPR017930Myb domain
SuperFamilySSF466892.69E-1496152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2298153IPR006447Myb domain, plants
PfamPF002492.1E-999150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MIRAGSPNTQ GSKTSLSNNH KVDEESEEDD KVLLLEEEEE EEEEEEVGEE VDDNSNSNSR  60
VMIKINGSSS STSTVEEDDK KGPNSSGSVR PYNRSKMPRL RWTPDLHLCF VHAVERLGGQ  120
ERATPKLVLQ MMNIKGLSIA HVKSHLQMYR SKKIDESNQA AMSNQGIFSD NGRDNIYNLS  180
QLPMLQGYNH QRPPFSLRYG DPSWRGHSNQ AYAPYNVGTS SSERSRNGLN FSSLPERMIF  240
SSSNSNIFQG QMSNWRNQQT LKKTPIILSH QSNGSSSCQS TSRPIRSNME LNLAISPIQQ  300
VVPRDQGKDH QRSNSSNFLK PYSNIIDIKQ GSTTTTSNHL KRKAMDLDLS LALAHPKDID  360
NNDPLTKKNT KDKEVIIGSS DKLLSLSLQY PPPPLLLSSS SEHDNQFIIS KLKEGDASSS  420
RMNNKQQTRT SLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-1899153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1899153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1899153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1899153357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1899153458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841563.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A0K9R1I50.0A0A0K9R1I5_SPIOL; Uncharacterized protein
STRINGXP_010693076.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-53G2-like family protein