PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_113870_nrai.t1
Common NameSOVF_113870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 324aa    MW: 36388.4 Da    PI: 6.8788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_113870_nrai.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-1495146155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+e++k+L+
  Sp_113870_nrai.t1  95 QRMTHITVERNRRKQMNEHLAVLRSLMPES---YAQRGDQASIVGGAIEFVKELE 146
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1693162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1493150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-1393150No hitNo description
PROSITE profilePS5088815.19994145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEMMPNYN DFFNFMVYET LNNAPIYGSN FGIMDDLFVM ENPENLGGIS GLGSMDQCPS  60
SRTASKRVNL GVVQGRKVRR RRPKVSKNKE EAETQRMTHI TVERNRRKQM NEHLAVLRSL  120
MPESYAQRGD QASIVGGAIE FVKELEHLVQ SLELQKMIFL QQTGIMKSET GDSNSNSNNT  180
PTTTYNSTLS TQFPEFFTDS DQTFSEVGNK YTLKSKAEVA EIEVTLIETH ANLRILSKKN  240
PRQLSKLVSG FQTLRFTVLH LSVTTLDPLV LYSISLKVEE GCQLTTVDSI TEAVHHMLRI  300
IEQDVAPSFC ASRKGFSPCT GPVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195106RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852436.10.0transcription factor bHLH71-like
SwissprotQ9C7T42e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9R2H70.0A0A0K9R2H7_SPIOL; Uncharacterized protein
STRINGXP_010695562.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]