PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_112930_fado.t1
Common NameSOVF_112930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 273aa    MW: 30269.4 Da    PI: 5.416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_112930_fado.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-1379126254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r  h+e+E+rRR+riNs +++Lr++lP        K +Ka+ L k+v+ + +L
  Sp_112930_fado.t1  79 RIHHKEAEKRRRERINSHLDRLRSILPCT-----SKTDKATLLSKVVQRVLEL 126
                        889*************************7.....699******9999877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26977126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1478140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-1279129No hitNo description
PfamPF000102.4E-1079126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1379137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1083132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.06E-5183232No hitNo description
Gene3DG3DSA:3.30.70.2606.1E-6183232No hitNo description
CDDcd048733.62E-8183245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQQFSDDFDF ANNTTSSEME IYRYSAAAGG GVNDVVNWPA AANYNNNYSS SGSCGASFYT  60
GLLNDTTTAT EAKALAASRI HHKEAEKRRR ERINSHLDRL RSILPCTSKT DKATLLSKVV  120
QRVLELKRQT SELNELDNLM IPSENDEFAV YIHNNNDNNS NNQFDIEDGD SNNNNHKLIL  180
KASLCCEDRP DLFADLNGVL SSLNLKTLRA EVSSLGGRIQ SVFIVSADNN SVQSDDCAVF  240
LRDALKGIVQ RSGSGSDERL KRRRRVFDSV ADC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835940.10.0transcription factor bHLH106-like
SwissprotO806747e-47BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0K9R2V20.0A0A0K9R2V2_SPIOL; Uncharacterized protein
STRINGXP_010673045.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]