PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_112930_fado.t1 | ||||||||
Common Name | SOVF_112930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 30269.4 Da PI: 5.416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 79 | 126 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r h+e+E+rRR+riNs +++Lr++lP K +Ka+ L k+v+ + +L Sp_112930_fado.t1 79 RIHHKEAEKRRRERINSHLDRLRSILPCT-----SKTDKATLLSKVVQRVLEL 126 889*************************7.....699******9999877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 78 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-12 | 79 | 129 | No hit | No description |
Pfam | PF00010 | 2.4E-10 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-13 | 79 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.06E-5 | 183 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.1E-6 | 183 | 232 | No hit | No description |
CDD | cd04873 | 3.62E-8 | 183 | 245 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MQQFSDDFDF ANNTTSSEME IYRYSAAAGG GVNDVVNWPA AANYNNNYSS SGSCGASFYT 60 GLLNDTTTAT EAKALAASRI HHKEAEKRRR ERINSHLDRL RSILPCTSKT DKATLLSKVV 120 QRVLELKRQT SELNELDNLM IPSENDEFAV YIHNNNDNNS NNQFDIEDGD SNNNNHKLIL 180 KASLCCEDRP DLFADLNGVL SSLNLKTLRA EVSSLGGRIQ SVFIVSADNN SVQSDDCAVF 240 LRDALKGIVQ RSGSGSDERL KRRRRVFDSV ADC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 265 | KRRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835940.1 | 0.0 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 7e-47 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0K9R2V2 | 0.0 | A0A0K9R2V2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673045.1 | 1e-137 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 5e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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