PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_111800_fumr.t2 | ||||||||
Common Name | SOVF_111800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 27148.2 Da PI: 9.0576 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2.1e-31 | 157 | 215 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++ Yeg+H h+ Sp_111800_fumr.t2 157 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITSYEGRHVHS 215 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 142 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-28 | 149 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.782 | 152 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-36 | 157 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 158 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEMLNQGLME GLSSSQIGFY LNSTNLNNYS PPPLGTNHHH HQQQQQSDDL KPLNHNHSNY 60 YLQSSFTLDH VTSTLTKAAS REDDYLSVNY NLCRSAAWGE GTKGLFQLGG SKRSCNGEDD 120 YPNYVGVSAV KMKKIKGRRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTLHPRSY 180 YRCTQDNCRV KKRVERLAED PRMVITSYEG RHVHSPSNDL DESQGGTQPQ LNNFFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 148 | 214 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 148 | 214 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021841004.1 | 1e-180 | probable WRKY transcription factor 8 isoform X1 | ||||
TrEMBL | A0A0K9R381 | 1e-178 | A0A0K9R381_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680328.1 | 1e-110 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-62 | WRKY DNA-binding protein 13 |