PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111800_fumr.t1
Common NameSOVF_111800
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 235aa    MW: 27075.1 Da    PI: 9.0137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111800_fumr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31156214159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++ Yeg+H h+
  Sp_111800_fumr.t1 156 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITSYEGRHVHS 214
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32141214IPR003657WRKY domain
SuperFamilySSF1182904.45E-28148215IPR003657WRKY domain
PROSITE profilePS5081128.782151216IPR003657WRKY domain
SMARTSM007749.4E-36156215IPR003657WRKY domain
PfamPF031061.8E-24157213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEMLNQGLME GLSSSQIGFY LNSTNLNNYS PPPLGTNHHH HQQQQQSDDL KPLNHNHSNY  60
YLQSSFTLDH VTSTLTKAAS REDDYLSVNY NLWSAAWGEG TKGLFQLGGS KRSCNGEDDY  120
PNYVGVSAVK MKKIKGRRKV REPRFCFKTM SDVDVLDDGY KWRKYGQKVV KNTLHPRSYY  180
RCTQDNCRVK KRVERLAEDP RMVITSYEGR HVHSPSNDLD ESQGGTQPQL NNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25147213874Probable WRKY transcription factor 4
2lex_A1e-25147213874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841009.11e-179probable WRKY transcription factor 8 isoform X2
TrEMBLA0A0K9R4U41e-177A0A0K9R4U4_SPIOL; Uncharacterized protein
STRINGXP_010680328.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-62WRKY DNA-binding protein 13