PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111430_dufz.t1
Common NameSOVF_111430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 361aa    MW: 38603.1 Da    PI: 8.0352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111430_dufz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000313659123
                       EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                       +kC+ C+k  s+ s ++ H    H
  Sp_111430_dufz.t1 36 FKCHVCNKKLSTASGMVIHVLQvH 59
                       89*****************87656 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080810.491766IPR003656Zinc finger, BED-type
SuperFamilySSF576675.45E-61261No hitNo description
SMARTSM003553.51235IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5593664IPR007087Zinc finger, C2H2
SMARTSM003550.0223659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGKKKKRPVE KVFCYYCDRE FDDEKILLQH QKAKHFKCHV CNKKLSTASG MVIHVLQVHK  60
ENVTKVPNAK PEREATDIDI YGMQGIPPDV LAAHYGEQEE DTPSKSAKVD VPGTNIVGGM  120
MPGGFAPPGT YGVMQRPMYN PAVPGPHGWQ VPRPPAWYPP PPGMSMPPAV SAPQAASVPP  180
QQPLFPVQSI APPLSSAVAP VSQPPYPPGV HSSPAPIPVS QPLFPVGAAA TMANQIMPAG  240
ILPDMKASAA AYSSVHPNMV NSYHLPNGPG AANNSHSYAS GPNTGGPSIG PPPVIANKAP  300
VNQPAGNEVY LVWEDEAMSM EERRASLPKH QVHDETSQMN SIDAAIDRRI SESRLAGRMA  360
F
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843596.10.0protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G01e-132SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A0K9R5930.0A0A0K9R593_SPIOL; Uncharacterized protein
STRINGXP_010680158.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]