PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111390_dnnq.t2
Common NameSOVF_111390
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 504aa    MW: 55035.2 Da    PI: 5.9271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111390_dnnq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09319367355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Sp_111390_dnnq.t2 319 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 367
                        58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17314384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-11314371No hitNo description
PROSITE profilePS5088815.485316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16317383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6319367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDMNDKDKLE LEKRNEAPLS YHPSGVSADW RYDIPSFANS SMGPVPSGNS MDVCGDAVGP  60
SCSSGSMVDS FGPTTVWEHP VNTGFKEMNV HNVSDPLLML KSGLFLPSML PHTLSQFPTD  120
SAFIERAARF SSFSGGHFGE MLNPLGIHQS DNPYIRGGAM MQGPQEEVNA FKTLAGRHPQ  180
KPEASLDETE HGNETTMVER SNEEAKQTVS MSGNDSYEPQ FSGGLAQEEG VQLSAKAEGA  240
KKRKRGNQDA AEAEQSNGIQ QGSVEARKNN LDIQNKEEQI STPTGNKSSG KNVKQTSQAS  300
DSAKEDYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII  360
NYVQSLQRQV EFLSMKLATV HPRLDFNIER LLTKDMFSGR AGPSSGLAFS PVIQMPYSSL  420
NQTQQPILPP GLSGTGNSSD ILRRMISSQL SNMGGGYRES AQQLQNAWDG ELHNVVQMGF  480
NASSPHDNQE TNCSVPTSQM KAES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245AKKRKRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838053.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0K9R3C30.0A0A0K9R3C3_SPIOL; Uncharacterized protein
STRINGXP_010681176.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-108bHLH family protein