PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111270_hwee.t1
Common NameSOVF_111270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 518aa    MW: 56250.1 Da    PI: 6.2477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111270_hwee.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12289335354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++   Er+RR++ N++++ Lr+l+P++     +K + a+i+  A+++I++L
  Sp_111270_hwee.t1 289 PKNFVTERQRRQNFNDKYQHLRSLVPNQ-----TKGDRASIVFDAINHINEL 335
                        567889*********************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.256286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.85E-13291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-10294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-10295339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MYDQTTTEAA AACFDPNNIS EAAAATAIHT VNGNGFVSHE TNNHNHIHQT HESDSSMEFQ  60
NPNLGNGFGI IPTDDQSNHD PNTNTWGPTN VNHEMGVGSG GGFSHFDENL HPTTDLLTLL  120
HLPRCSFTSS STTSLLPTNQ SLSFGKPSSP PPSSALGFLG DINPCMMVDN PSGSGSSTIS  180
YDPSTITGAT ATAFSYDPLF HLNLPPQPSP LLRDLMYHQT LPHGYNNTGR SGNGILGNGN  240
GNSSCLFGGL DDGDQGNTMN GIYQDGDHLI HGNGVFEFSK GDGKGGKCPK NFVTERQRRQ  300
NFNDKYQHLR SLVPNQTKGD RASIVFDAIN HINELRRTVG ELKLLVEKKR MSKERKKRHK  360
TDHQDTLNIN GTTATTTTCT GDGDHNSNVV DGPAVVKPDP DEEFNGSAAI QLRSSWIQRK  420
CKDTEVDVRI VDDDVTIKLV QRKKINCLLF VSRTLDELQL DLRHVAGGHV GDYYSYLFNS  480
KICEGSSVYA SAIANKLIEV VERQYAAASV AVAPTSSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850497.10.0transcription factor bHLH91-like
TrEMBLA0A0K9R3E50.0A0A0K9R3E5_SPIOL; Uncharacterized protein
STRINGXP_010691929.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-61bHLH family protein