PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111190_difc.t1
Common NameSOVF_111190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 445aa    MW: 49500.8 Da    PI: 6.3215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111190_difc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-10156193441
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                         k  rr+++NReAA++sR+RKka++e+Le    +L + 
  Sp_111190_difc.t1 156 QKTLRRLAQNREAAKKSRLRKKAYVEQLESSRVKLAQL 193
                        5788************************9754444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.7E-8148199No hitNo description
SMARTSM003386.3E-8153216IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243155199IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.89E-6157198No hitNo description
PfamPF001701.3E-7157196IPR004827Basic-leucine zipper domain
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
PfamPF141442.6E-27241315IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQSFRELYCH PSDPTYFFRG EESITPNIGE LYHQVVFHQQ DAVDLSRSGL RSSNVAFPSS  60
LPFQAVNPNN YLGPSATAAT VATTRVVEAG ELVGEKRTVG GRELEYWGES ATMADTSQQT  120
DTSTDVDTDD RNQCQVIQNG AVVDSTDQSK GKTDDQKTLR RLAQNREAAK KSRLRKKAYV  180
EQLESSRVKL AQLEQQLERA RQQGFMVTGV GNEPGHSLGT NGVVAFDVHY GVWLDQHQRL  240
INDTRSALKS HVCDDELLVV VDSLMSHYDE LFRLKSIGAK SDIFHLLSGM WQTPAERCFM  300
WLGGFRSSEL LKILVNHLQP LTEQQLMGVC NLQQSSQQAE DALSQGMEAL QQSLVDTLSA  360
NCLGPCSTGI VADYMGQMAI AMGKLATLEN FVHQADLLRQ QTLQQLHRIL TTRQAAQALL  420
VIHDYTARLR ALSSLWLARP KNCNA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3031333e-81KF303133.1 Beta vulgaris genotype 2_SB34_a SNP marker Bakooie genomic sequence.
GenBankKF3031343e-81KF303134.1 Beta vulgaris genotype 3_SB34_b SNP marker Bakooie genomic sequence.
GenBankKF3031353e-81KF303135.1 Beta vulgaris genotype 6_SB33 SNP marker Bakooie genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866957.10.0transcription factor TGA2-like isoform X1
SwissprotO241601e-156TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0K9R2Z60.0A0A0K9R2Z6_SPIOL; Uncharacterized protein
STRINGXP_010667846.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-119bZIP family protein