PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_110710_zzug.t1
Common NameSOVF_110710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 339aa    MW: 38425 Da    PI: 4.7418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_110710_zzug.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.1e-27127187158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ++Dg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+ d+++ +i+Y+geH++
  Sp_110710_zzug.t1 127 VEDGFSWRKYGQKDILGAKFPRGYYRCTHRhtkGCAATKQVQRSDGDESIYQIMYRGEHTC 187
                        58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-26118187IPR003657WRKY domain
PROSITE profilePS5081121.345122185IPR003657WRKY domain
SuperFamilySSF1182903.4E-24123187IPR003657WRKY domain
SMARTSM007745.9E-38127189IPR003657WRKY domain
PfamPF031062.2E-26128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEEVMGFDRS AHLINELLQG MEFAKELRNR IMNPENKGCL SDDNDDQVAL NNSLLEKMLS  60
SFDKTITIAK LLHIQLPLHP SESPHSLTIS SPISENSHPD DSPPSKRRRV MMRKWTKIVK  120
MSSERGVEDG FSWRKYGQKD ILGAKFPRGY YRCTHRHTKG CAATKQVQRS DGDESIYQIM  180
YRGEHTCFQG AQAQFDDIIP AQMKSEQQPP PSPKEQEVYV GLSPEGELKV ESEQEPENRA  240
QYFRSLSFTP ANLQVVQPDP IESYLMSYCS DFDSPTTSVS NYLQVLPYNH IGLTVETSGT  300
EFTEAVSGPN SVTNSPMMDD FEFPIEELLD FGGNFSFEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-21116185374Disease resistance protein RRS1
5w3x_D7e-21116185374Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851707.10.0probable WRKY transcription factor 41
TrEMBLA0A0K9R5K50.0A0A0K9R5K5_SPIOL; Uncharacterized protein
STRINGXP_010669256.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-41WRKY family protein