PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_110580_qepk.t1
Common NameSOVF_110580
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 518aa    MW: 56223.1 Da    PI: 7.1792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_110580_qepk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33237293259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+a Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Sp_110580_qepk.t1 237 DDGYNWRKYGQKQVKGSEYPRSYYKCTHAACPVKKKVERSL-DGQVTEIIYKGQHNHQ 293
                        8****************************************.***************8 PP
2WRKY105.43e-33408466159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a+dpk+v++tYeg+H+h+
  Sp_110580_qepk.t1 408 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYAGCNVRKHVERAASDPKAVITTYEGKHDHD 466
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30223295IPR003657WRKY domain
PROSITE profilePS5081124.076231295IPR003657WRKY domain
SuperFamilySSF1182902.35E-26232295IPR003657WRKY domain
SMARTSM007744.3E-37236294IPR003657WRKY domain
PfamPF031061.3E-25237293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36393468IPR003657WRKY domain
SuperFamilySSF1182901.57E-29400468IPR003657WRKY domain
PROSITE profilePS5081137.895403468IPR003657WRKY domain
SMARTSM007747.0E-39408467IPR003657WRKY domain
PfamPF031068.2E-26409465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAENDATPSV KPPPPPKPPS SSSSLQRPTI TLPSRAGIES LFSGSGFGLS PGPMTLVSSF  60
FSENDPDSDC RSFSQLLAGA IASPRPPSEP DLVRFKENRP ASLVISPPPT SQQQQGGGGG  120
GGGGFFMLSP GLSPATLLDS PGLFPGQGPF GMSHQQALAQ VTAQAQANLQ MQGGFQSSLA  180
LVPSTSDPFP GFSSEMSMEH NILSSAPDSR EIKEAAQVSG SDQRSQFSSI IADKPADDGY  240
NWRKYGQKQV KGSEYPRSYY KCTHAACPVK KKVERSLDGQ VTEIIYKGQH NHQPPQKRSK  300
DSGILNENPG TQGNPDSAMQ PQANNTSETM AYSLSKRDQE SSQATTEHLS SDEEEVGNAG  360
AREARGDEDE PDAKRRITEV RVTEQTASHR TVTEPRIIVQ TTSEVDLLDD GYRWRKYGQK  420
VVKGNPYPRS YYKCTYAGCN VRKHVERAAS DPKAVITTYE GKHDHDVPAA RMSSHNTANN  480
NSSQMRPHNN NSYVGKTDFT NTHQQPVALL RLKEERIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-41237469878Probable WRKY transcription factor 4
2lex_A9e-41237469878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839037.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-168WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0K9R3N80.0A0A0K9R3N8_SPIOL; Uncharacterized protein
STRINGXP_010683088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-149WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]