PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_108350_sisg.t1
Common NameSOVF_108350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 327aa    MW: 36858 Da    PI: 6.2827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_108350_sisg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEd +++ +v  +G g+W+ ++++ g++R++k+c++rw +yl
  Sp_108350_sisg.t1 14 KGLWTPEEDAKILAYVSNHGVGNWTQVPKKAGLNRCGKSCRLRWTNYL 61
                       678*******************************************97 PP
2Myb_DNA-binding50.64.4e-1669110346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +T++E++l++++++  G++ W++Ia++++ gRt++++k++w++
  Sp_108350_sisg.t1  69 EFTEQEEQLIIQYHAAIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110
                        69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.502965IPR017930Myb domain
SuperFamilySSF466894.87E-3111108IPR009057Homeodomain-like
SMARTSM007179.6E-151363IPR001005SANT/Myb domain
PfamPF002497.7E-161461IPR001005SANT/Myb domain
CDDcd001672.30E-111761No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.36966116IPR017930Myb domain
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002494.7E-1569110IPR001005SANT/Myb domain
CDDcd001678.64E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRPPCCDKA NVKKGLWTPE EDAKILAYVS NHGVGNWTQV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHEEF TEQEEQLIIQ YHAAIGSRWS LIAKHLPGRT DNDVKNYWNT KLKKKLAKMG  120
IDPVTHKPIS KILSDYESIS CLSNNHQMRS LDQNLTNSFS QCRISPTDNP ETQFQDVTSF  180
NHYVLEEISP SSSSSSTTSI SNGQTSSHLL VSGAAYSWGH KSSVDPLLNT DITEEEHNYQ  240
GFLATDFQPQ IQENSSQFQT IGVNHTSSKV TDDKLEMADC KVAAKNSVRS SCYDYEPSSV  300
NSFVMALFDR DSQIQLDFPA FDDILDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866687.10.0transcription factor MYB35
TrEMBLA0A0K9R4930.0A0A0K9R493_SPIOL; Uncharacterized protein
STRINGXP_010670356.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.15e-78MYB family protein