PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_108110_cazn.t1
Common NameSOVF_108110
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 340aa    MW: 38228.1 Da    PI: 4.4759
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_108110_cazn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1998151356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Sp_108110_cazn.t1  98 KKRRLTVHQVQFLEKSFEVDNKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 151
                        56789************************************************9 PP
2HD-ZIP_I/II124.93.8e-4097189193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ +qv++LE+sFe ++kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkd+++L+++++ lk++ e+L +e+e+L++e+ 
  Sp_108110_cazn.t1  97 EKKRRLTVHQVQFLEKSFEVDNKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFDSLQSNFNDLKSDYENLLQEKEKLQAEVV 188
                        69**************************************************************************************9986 PP

        HD-ZIP_I/II  93 e 93 
                        +
  Sp_108110_cazn.t1 189 Q 189
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-2084155IPR009057Homeodomain-like
PROSITE profilePS5007117.47593153IPR001356Homeobox domain
SMARTSM003896.0E-2096157IPR001356Homeobox domain
PfamPF000464.7E-1798151IPR001356Homeobox domain
CDDcd000863.68E-1898154No hitNo description
Gene3DG3DSA:1.10.10.601.7E-19103152IPR009057Homeodomain-like
PRINTSPR000311.0E-5124133IPR000047Helix-turn-helix motif
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5133149IPR000047Helix-turn-helix motif
PfamPF021831.2E-14153194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAGAGVGRVF GGGSSGGCGG NGSVGASLLF NQRLPRSSQS PEPFFISGSS STFLGSSSMV  60
SFEDVVGGKR SERPFFCTYD QEENGDEDFD DYFHQPEKKR RLTVHQVQFL EKSFEVDNKL  120
EPERKVQLAK DLGLQPRQVA IWFQNRRARW KTKQLEKDFD SLQSNFNDLK SDYENLLQEK  180
EKLQAEVVQL TDKLLLKEKK QGEHSAPFNT NIEPKTVQEE PIVESASETE DHLVSVFGCK  240
QEDLSSVKSD VIDSDSPHYV DAATHSPFGE PSETYAFEAD HSDISQDDED YLSKSLLPSS  300
HVFMKIGDVD YPDPPANNYG LQGEDHASLF WPYWDINLKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850966.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0K9R4D10.0A0A0K9R4D1_SPIOL; Uncharacterized protein
STRINGXP_010678585.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-45homeobox 1