PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107530_efyk.t1
Common NameSOVF_107530
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 142aa    MW: 16364.5 Da    PI: 9.6193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107530_efyk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEde+lv+++k  G g+W++ ++  g+ R++k+c++rw +yl
  Sp_107530_efyk.t1 14 KGAWTKEEDERLVNYIKVNGEGCWRSLPKSAGLQRCGKSCRLRWINYL 61
                       79********************************************97 PP
2Myb_DNA-binding59.66.6e-1967111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Sp_107530_efyk.t1  67 RGNFSDEEDELIINLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.354961IPR017930Myb domain
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-2913108IPR009057Homeodomain-like
PfamPF002493.1E-151461IPR001005SANT/Myb domain
CDDcd001671.11E-91661No hitNo description
PROSITE profilePS5129428.36762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2865117IPR009057Homeodomain-like
SMARTSM007173.3E-1766114IPR001005SANT/Myb domain
PfamPF002495.5E-1767111IPR001005SANT/Myb domain
CDDcd001674.62E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLVNYIK VNGEGCWRSL PKSAGLQRCG KSCRLRWINY  60
LRPDLRRGNF SDEEDELIIN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHRLVN STITTTNDNA TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836380.11e-102myb-related protein 330-like
SwissprotP813953e-83MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A0K9R6601e-100A0A0K9R660_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010675151.12e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-85myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]