PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107410_ucwr.t1
Common NameSOVF_107410
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 204aa    MW: 23513.7 Da    PI: 5.7399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107410_ucwr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59.1e-31143201159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDgy+WrKYG+K+vk+s++pr+YYrC   gCpvkk+ver+++d k+v++tYeg+Hnh+
  Sp_107410_ucwr.t1 143 VDDGYKWRKYGKKMVKNSPNPRNYYRCGVDGCPVKKRVERDRDDMKYVITTYEGNHNHD 201
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-33128203IPR003657WRKY domain
SuperFamilySSF1182905.36E-28136203IPR003657WRKY domain
PROSITE profilePS5081132.512138203IPR003657WRKY domain
SMARTSM007741.7E-34143202IPR003657WRKY domain
PfamPF031065.9E-24144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTMASPNVNT SLCFVPFSTL PYQNNNNNNL MNYTNTNTNT NTNTNTNTTA TFSSLESSGS  60
DQYFEQGTDF EVSDFFSFED WGNQQQCMDS GLMNTQDFVY QGSELLQNTS SIQHEGENSN  120
VIRNVRQKKE RVAFRMKSEI DVVDDGYKWR KYGKKMVKNS PNPRNYYRCG VDGCPVKKRV  180
ERDRDDMKYV ITTYEGNHNH DAPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-27131203274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855807.11e-128probable WRKY transcription factor 50
TrEMBLA0A0K9R6901e-151A0A0K9R690_SPIOL; Uncharacterized protein
STRINGXP_010669354.18e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-41WRKY DNA-binding protein 50