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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sp_107150_peqn.t1 |
| Common Name | SOVF_107150 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 31115.8 Da PI: 10.3208 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_107150_peqn.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 326.5 | 7.4e-100 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd.......maflqrdkalaernkalverdnkllal 84
md dg + rn+gyy+p +k +l+lqlms +a+r + +r+ ++++++a+++rd +++++rd++++ rdnk+l++
Sp_107150_peqn.t1 1 MDGDGGLNmRNWGYYDPP--MK-HLNLQLMSNMADRKPLLGTRDSLIANTNGAFNQRDyvvpnyqVDYMMRDAWIH--------RDNKYLNM 81
899999999*********..77.*****************9999999***********999666666666666665........5******* PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
l++ +s + + +t +++ q + +++ +ee+ ++ ++ ++ ++ kkr+ +k++k++k+kk+kk ++ +k+
Sp_107150_peqn.t1 82 LPTPHS--------YAIPTETPPTHHPMQ-----MLRQPESSNEER-----TVRMEPVTEINNGPLKKRSAGKSEKAPKTKKPKKAPTGPKE 155
**7775........555555555554333.....333344433444.....455555556677788888999999**********8888866 PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
+ ++ +r+k+ kk++++ +ng+++D+st+P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmS gafkk+
Sp_107150_peqn.t1 156 GGSGSG--QRAKSAKKTTEVIINGIDMDISTIPIPVCSCTGTPQQCYRWGSGGWQSACCTTSMSMYPLPMSVKRRGARIAGRKMSLGAFKKV 245
666665..89********************************************************************************** PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LekLaaeGy++ np+DL++hWAkHGtnkfvtir
Sp_107150_peqn.t1 246 LEKLAAEGYNFTNPIDLRTHWAKHGTNKFVTIR 278
********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDGDGGLNMR NWGYYDPPMK HLNLQLMSNM ADRKPLLGTR DSLIANTNGA FNQRDYVVPN 60
YQVDYMMRDA WIHRDNKYLN MLPTPHSYAI PTETPPTHHP MQMLRQPESS NEERTVRMEP 120
VTEINNGPLK KRSAGKSEKA PKTKKPKKAP TGPKEGGSGS GQRAKSAKKT TEVIINGIDM 180
DISTIPIPVC SCTGTPQQCY RWGSGGWQSA CCTTSMSMYP LPMSVKRRGA RIAGRKMSLG 240
AFKKVLEKLA AEGYNFTNPI DLRTHWAKHG TNKFVTIR
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 130 | 144 | KRSAGKSEKAPKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
