PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_106870_iute.t1

Common Name

SOVF_106870

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 387aa MW: 41076.9 Da PI: 8.641

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_106870_iute.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	78	136	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGG+lrnvP+Ggg+rknk++ Sp_106870_iute.t1 78 QQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGTLRNVPIGGGCRKNKST 136 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	78	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-33	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MIQELLGETS VPTSFLGERK ISIPFSSPPP HSTTPILTTT STSIATSSTP SSSPLLPTAT 60 GGNNNNTTTA SEASNASQQN LRCPRCDSTN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGT 120 LRNVPIGGGC RKNKSTIVSG STSSSSGLVK SSSNAMAKAK ASLSTELLVN GNPGFLGNGL 180 LDHFHHHHSD LHSASSNPIL WPSLEQNSHI LSLLRGSNQF HNPNPNPNPI SNGFVSVKTE 240 GTNLGLDSYG NGSLLGSFQR SNQHQVNGYS SGVVPDFGNN HNNNNSNSNS NILELYQRLK 300 SSSNNNYNNY CGNENNQGTT TTMILGNMVG GSTSPSSSSS PMHSTILDSA PVGGGGDHNY 360 GGYSFMNSPA MSGWSDYPIA PINGAYP

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MIQELLGETS VPTSFLGERK ISIPFSSPPP HSTTPILTTT STSIATSSTP SSSPLLPTAT  60
GGNNNNTTTA SEASNASQQN LRCPRCDSTN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGT  120
LRNVPIGGGC RKNKSTIVSG STSSSSGLVK SSSNAMAKAK ASLSTELLVN GNPGFLGNGL  180
LDHFHHHHSD LHSASSNPIL WPSLEQNSHI LSLLRGSNQF HNPNPNPNPI SNGFVSVKTE  240
GTNLGLDSYG NGSLLGSFQR SNQHQVNGYS SGVVPDFGNN HNNNNSNSNS NILELYQRLK  300
SSSNNNYNNY CGNENNQGTT TTMILGNMVG GSTSPSSSSS PMHSTILDSA PVGGGGDHNY  360
GGYSFMNSPA MSGWSDYPIA PINGAYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835895.1	0.0	dof zinc finger protein DOF4.7-like isoform X1
Refseq	XP_021835896.1	0.0	dof zinc finger protein DOF4.7-like isoform X2
Refseq	XP_021835897.1	0.0	dof zinc finger protein DOF4.7-like isoform X3
TrEMBL	A0A0K9R6D7	0.0	A0A0K9R6D7_SPIOL; Uncharacterized protein
STRING	XP_010680457.1	1e-158	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-32	TARGET OF MONOPTEROS 6