PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_106280_aywm.t1
Common NameSOVF_106280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 655aa    MW: 72305.4 Da    PI: 6.0181
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_106280_aywm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30292351159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg Hnh+
  Sp_106280_aywm.t1 292 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGAHNHP 351
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31277353IPR003657WRKY domain
SuperFamilySSF1182903.14E-27284353IPR003657WRKY domain
PROSITE profilePS5081128.461287353IPR003657WRKY domain
SMARTSM007741.1E-36292352IPR003657WRKY domain
PfamPF031061.4E-26293351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MTSMEQKHQQ GGGTCNSTHD QEGNFKEEDK DGNNRRKMVE SSSSPTTSFI NETHKNGVED  60
NNKDDDDGHG DGNLIQHTAA DQNYKETDVC KQGKELESTK AEMGEVMEEN QRLKQYLDQA  120
MKDYQTLQKK FHEISQHDSK QQLIKDDHNQ MEAPPLIIRP LISDEDGEEA ELVSLSLGRS  180
SSLDSKKGKP SSSPSKLPTN HNNNDDDDKE ANERSLDLGL ECNFKGSSTI DHDQQTLMTG  240
SSVDEHSLDE TKDGEALKNS NGNSNGVDEV VHQPPVKKAR VSVRVRCDTP TMNDGCQWRK  300
YGQKIAKGNP CPRAYYRCTV APSCPVRKQV QRCAEDMSIL ITTYEGAHNH PLPVSASAMA  360
STTSAAAYML MSKSSTSSNP GPDSSTTTPT GSEIHGGHKF DILDNSKPNP FYSPNNTFYP  420
TPTHPTVTLD LTSPSSSTNQ FNKVLTPNLG TKYSSPTNLT FNFSDNNNNN NPLLFSWPKG  480
LPSYNTHQPY INQTKDNNPL NIGSLNDNNT YNYHTNLLQK SIIPPNNREF NTLPDTFAQA  540
AKVLTSDPNF QSILTATLSS FISNNNGIGE NNNVLHHGGE RNNNNNNNNN NNNNNNNNNN  600
NNNNTTSYGD TTKWGGFHTS STTNSTFQSS SLPPFSTTKR KSPSPDNTKT TQLDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20279353174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850961.10.0probable WRKY transcription factor 61
TrEMBLA0A0K9R6C40.0A0A0K9R6C4_SPIOL; Uncharacterized protein
STRINGXP_010678574.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.15e-58WRKY DNA-binding protein 61