PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_105730_ipcc.t1
Common NameSOVF_105730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 304aa    MW: 32060.6 Da    PI: 7.0342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_105730_ipcc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-111255445
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       W+ e d+ + +a++ +  +   +W++Ia+ ++ g+tl+++k+++ 
  Sp_105730_ipcc.t1 12 WSREQDKAFENAIATHCEDledNWEKIAADVP-GKTLEEVKHHYE 55
                       *****************99*************.**********96 PP
2Myb_DNA-binding41.92.2e-13122166347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Sp_105730_ipcc.t1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                        6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.22762IPR017884SANT domain
SMARTSM007172.3E-6860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-51157IPR009057Homeodomain-like
CDDcd001676.06E-91258No hitNo description
SuperFamilySSF466891.2E-101265IPR009057Homeodomain-like
PfamPF002496.0E-81255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.24E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10122165IPR009057Homeodomain-like
CDDcd001679.11E-10122167No hitNo description
PfamPF002492.8E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTVDEKGDSS FWSREQDKAF ENAIATHCED LEDNWEKIAA DVPGKTLEEV KHHYELLFED  60
VKQIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGLSANG GSESNHASKA SKADQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNS GEISASQGPI TGQTNGPGPV SGTPSGKPEK QVAQPPPGGS SSGVGVGVYG  240
TPPSIGQPIG GGPLVSAVGT PVNLSAPPHL GYGMRVPVPG SVVPGAPVGM APLTYPMPQT  300
SAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1712771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841945.10.0transcription factor SRM1
RefseqXP_021841946.10.0transcription factor SRM1
RefseqXP_021841947.10.0transcription factor SRM1
RefseqXP_021841948.10.0transcription factor SRM1
RefseqXP_021841949.10.0transcription factor SRM1
SwissprotQ9FNN61e-120SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9R7800.0A0A0K9R780_SPIOL; Uncharacterized protein
STRINGXP_010671196.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-95MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]