PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_105730_ipcc.t1

Common Name

SOVF_105730

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB

Protein Properties

Length: 304aa MW: 32060.6 Da PI: 7.0342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_105730_ipcc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.6e-11	12	55	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a++ + + +W++Ia+ ++ g+tl+++k+++ Sp_105730_ipcc.t1 12 WSREQDKAFENAIATHCEDledNWEKIAADVP-GKTLEEVKHHYE 55 ***************99*********.********96 PP
2	Myb_DNA-binding	41.9	2.2e-13	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Sp_105730_ipcc.t1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.22	7	62	IPR017884	SANT domain
SMART	SM00717	2.3E-6	8	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-5	11	57	IPR009057	Homeodomain-like
CDD	cd00167	6.06E-9	12	58	No hit	No description
SuperFamily	SSF46689	1.2E-10	12	65	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-8	12	55	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.581	114	171	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-16	117	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-17	119	169	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-10	119	169	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-10	122	165	IPR009057	Homeodomain-like
CDD	cd00167	9.11E-10	122	167	No hit	No description
Pfam	PF00249	2.8E-11	122	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MTVDEKGDSS FWSREQDKAF ENAIATHCED LEDNWEKIAA DVPGKTLEEV KHHYELLFED 60 VKQIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGLSANG GSESNHASKA SKADQERRKG 120 IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS 180 SIHDITSVNS GEISASQGPI TGQTNGPGPV SGTPSGKPEK QVAQPPPGGS SSGVGVGVYG 240 TPPSIGQPIG GGPLVSAVGT PVNLSAPPHL GYGMRVPVPG SVVPGAPVGM APLTYPMPQT 300 SAHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-17	12	77	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841945.1	0.0	transcription factor SRM1
Refseq	XP_021841946.1	0.0	transcription factor SRM1
Refseq	XP_021841947.1	0.0	transcription factor SRM1
Refseq	XP_021841948.1	0.0	transcription factor SRM1
Refseq	XP_021841949.1	0.0	transcription factor SRM1
Swissprot	Q9FNN6	1e-120	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0K9R780	0.0	A0A0K9R780_SPIOL; Uncharacterized protein
STRING	XP_010671196.1	1e-169	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-95	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]