PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Sp_105450_wuip.t1

Common Name

SOVF_105450

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 337aa MW: 37613.3 Da PI: 9.5624

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_105450_wuip.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.5	1.1e-15	39	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v+k++ + ++++qCk+k+e+++kry+ + ++ s++p+f++l+ Sp_105450_wuip.t1 39 EWSEGAVSSLLEAYESKWILRNRAKLKGQDWEDVAKHVssrsNNIKSPKTQTQCKNKIESMKKRYRSESATTDT------SSWPLFSRLD 122 5***********************************87766777788999***********9998885......57***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.8E-20	37	124	No hit	No description
SuperFamily	SSF101447	2.41E-5	163	178	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MERETNQDDQ NPSPTILEQS PRKPLLVSGS GGDRLKRDEW SEGAVSSLLE AYESKWILRN 60 RAKLKGQDWE DVAKHVSSRS NNIKSPKTQT QCKNKIESMK KRYRSESATT DTSSWPLFSR 120 LDNLLRGTGL PQAQSSPIKA IAVASNPGLV LESSPVAQHL PLPPPPPPPP PPPLHVPPQQ 180 ASPPVEIAQN SLESNGVEPM AKDDDEVAEK VSDKNHVDNQ IETDSSTPAL YSNDKDGPKL 240 KKSMKMKRKK RRREGSNSWE DVSESIRWLA EAVVRSEQVR MDTMRELERM RGEAEAKRGE 300 MDLKRTEIIS NTQLEIARLF ATTAGKNVDS SLRIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	252	KRKKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862422.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A0K9R582	0.0	A0A0K9R582_SPIOL; Uncharacterized protein
STRING	XP_010670500.1	1e-173	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-95	sequence-specific DNA binding transcription factors