PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_105270_kyxt.t2
Common NameSOVF_105270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 611aa    MW: 71594.1 Da    PI: 5.3316
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_105270_kyxt.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.73e-21132215189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +      +r+etrtgC a++++++ ++++w++++ +leHnH +
  Sp_105270_kyxt.t2 132 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTFKEAS-----CRRKETRTGCLAMMRLRLVETNRWRIDEAKLEHNHLF 215
                        69***************************************998777.....999********************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-18132215IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.976522558IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEDQEDNGDE LFENEGHDHE SEGHHGFGIE SDDHENDGEQ FLIDANIHEE SEQGLELEGE  60
DHCSDSQQFL EVRVHNAENE TFHMLDLHAN DEVHNLGNNT MGVDDEDGLS KERYYHPPTV  120
GMEFESYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTFKEASCR  180
RKETRTGCLA MMRLRLVETN RWRIDEAKLE HNHLFDPERV QNSKSHKKME VSLKRDLEPT  240
VDVEVRTIKL YRTSVVDAAS SWNLTSRGGD KDNHIQPRFL KLKSGDSQAM HNYFCQKQLT  300
RHPPQTIVTD RFKAIQIAIS EVFPRAHHRF WLPLVMQSII LNLGQLQEFE AFQSILSRTV  360
YNSLKIDEFE TSWDNMIDRF GIRDHEWLRV WYEDREKWAP AYQKDTFLAG LFAVQTGESF  420
NPFFAAHIHE KTSVQEFFDL YDVMTQKIRL KETLDDLESS ESNLLLRTRC YYELQLSKFY  480
TKRIFEKFQV EVEMMSCCVT INQVHTSGPV TTYVVKEHEG SFEVMYDKTA VEVRCVCAGF  540
YLNGYLCRHS LSILSHNGVE EIPFSYILQR WRKDCKHFYV PDVSSIDIID VTNPTQWYEH  600
LHKRAMQVVE A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844395.10.0protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_021844396.10.0protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_021844397.10.0protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_021844398.10.0protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBLA0A0K9R6V60.0A0A0K9R6V6_SPIOL; Uncharacterized protein
STRINGXP_010691106.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.17e-93FAR1-related sequence 6