PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_104590_rnkq.t2
Common NameSOVF_104590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 285aa    MW: 32626 Da    PI: 7.1509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_104590_rnkq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-1374116754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YIk+L
  Sp_104590_rnkq.t2  74 VSERKRRQKLNERLFALRAVVPNI-----TKMDKASIIKDAISYIKEL 116
                        57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.02267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1769132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-1270121No hitNo description
Gene3DG3DSA:4.10.280.106.4E-1773135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-1174116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDNFDPLWET DIIGMYLQNQ EFDSLGFDDT LSSYSSELRM LLLLGFDDTL SSYYDYDSSS  60
PDGCASSMTS KNIVSERKRR QKLNERLFAL RAVVPNITKM DKASIIKDAI SYIKELHEQE  120
RRIKSDISDL EHRRSKNGNN NSCSMMDYDQ ELPFVQIKSK KKRTDHRKQQ QQQHYDSNGC  180
YRSSVIDDLE VRVSYVGERT IVVSLTCSKR EGTMVKLCEM FESLKLKIIT AHITAFAGRL  240
LKTVFLESRH IRRADDCLVS LSSLHVVSST PVVAETTSDS TRLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1372126963Transcription factor MYC2
5gnj_B7e-1372126963Transcription factor MYC2
5gnj_E7e-1372126963Transcription factor MYC2
5gnj_F7e-1372126963Transcription factor MYC2
5gnj_G7e-1372126963Transcription factor MYC2
5gnj_I7e-1372126963Transcription factor MYC2
5gnj_M7e-1372126963Transcription factor MYC2
5gnj_N7e-1372126963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864669.11e-154transcription factor bHLH35-like
SwissprotQ2HIV91e-60BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0K9R7N90.0A0A0K9R7N9_SPIOL; Uncharacterized protein
STRINGXP_010667303.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-57bHLH family protein