PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_104590_rnkq.t2 | ||||||||
Common Name | SOVF_104590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 32626 Da PI: 7.1509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.8e-13 | 74 | 116 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ +K++Ka+i + A+ YIk+L Sp_104590_rnkq.t2 74 VSERKRRQKLNERLFALRAVVPNI-----TKMDKASIIKDAISYIKEL 116 57*********************7.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-17 | 69 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-12 | 70 | 121 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-17 | 73 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-15 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-11 | 74 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MDNFDPLWET DIIGMYLQNQ EFDSLGFDDT LSSYSSELRM LLLLGFDDTL SSYYDYDSSS 60 PDGCASSMTS KNIVSERKRR QKLNERLFAL RAVVPNITKM DKASIIKDAI SYIKELHEQE 120 RRIKSDISDL EHRRSKNGNN NSCSMMDYDQ ELPFVQIKSK KKRTDHRKQQ QQQHYDSNGC 180 YRSSVIDDLE VRVSYVGERT IVVSLTCSKR EGTMVKLCEM FESLKLKIIT AHITAFAGRL 240 LKTVFLESRH IRRADDCLVS LSSLHVVSST PVVAETTSDS TRLGV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-13 | 72 | 126 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 80 | ERKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021864669.1 | 1e-154 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-60 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0K9R7N9 | 0.0 | A0A0K9R7N9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010667303.1 | 1e-110 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.3 | 3e-57 | bHLH family protein |