PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_104590_rnkq.t1
Common NameSOVF_104590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 266aa    MW: 30483.5 Da    PI: 7.845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_104590_rnkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-135597754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YIk+L
  Sp_104590_rnkq.t1 55 VSERKRRQKLNERLFALRAVVPNI-----TKMDKASIIKDAISYIKEL 97
                       57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.0224897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1750113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1251102No hitNo description
Gene3DG3DSA:4.10.280.105.7E-1754116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDNFDPLWET DIIGMYLQNQ EFDSLGFDDT LSSYYDYDSS SPDGCASSMT SKNIVSERKR  60
RQKLNERLFA LRAVVPNITK MDKASIIKDA ISYIKELHEQ ERRIKSDISD LEHRRSKNGN  120
NNSCSMMDYD QELPFVQIKS KKKRTDHRKQ QQQQHYDSNG CYRSSVIDDL EVRVSYVGER  180
TIVVSLTCSK REGTMVKLCE MFESLKLKII TAHITAFAGR LLKTVFLESR HIRRADDCLV  240
SLSSLHVVSS TPVVAETTSD STRLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-145397953Transcription factor MYC2
5gnj_B5e-145397953Transcription factor MYC2
5gnj_E5e-145397953Transcription factor MYC2
5gnj_F5e-145397953Transcription factor MYC2
5gnj_G5e-145397953Transcription factor MYC2
5gnj_I5e-145397953Transcription factor MYC2
5gnj_M5e-145397953Transcription factor MYC2
5gnj_N5e-145397953Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864669.11e-159transcription factor bHLH35-like
SwissprotQ2HIV95e-63BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0K9R5K30.0A0A0K9R5K3_SPIOL; Uncharacterized protein
STRINGXP_010667303.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-59bHLH family protein