PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_104410_qony.t1 | ||||||||
Common Name | SOVF_104410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GRAS | ||||||||
Protein Properties | Length: 446aa MW: 50266.8 Da PI: 6.1026 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 234 | 6.5e-72 | 55 | 389 | 25 | 343 |
GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfshltaNqaIleavege.. 109 ++++ +s +gd+ qR+aayf+ +L+arl+ + s y + ++ ++ +ee++a++ ++ vsP+++f+h+taNqaIlea+ege Sp_104410_qony.t1 55 MKIEQKSSVTGDSGQRVAAYFADGLSARLLTQKSAFYYTQKSAFYYNMVmnkptPAEEFMAFTHLNRVSPFYQFAHFTANQAILEAFEGEee 146 579999************************9888777655443332222445668999999999*************************955 PP GRAS 110 ...ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledlele 192 ++H+iD+d+s+G+QWp+L+q+L++ + + sl iTg+++ s eel t++rL +f + + ++ fef+ l l+ +l+ Sp_104410_qony.t1 147 tnnWCLHVIDYDVSHGFQWPSLMQSLSEMAandanHRVVSLCITGLAK----SLEELIGTENRLVSFSKIFhNIAFEFHGL----LKGSKLK 230 444456*********************888544322244899******....9****************8758*******8....7778889 PP GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsleaklpr 277 +L+ ++ +E+laVnlv++l +l ++ + ++e++ ++ sl+P vvv+ve+e +h ++ + l +++l+yy+a+fdsl+ lp Sp_104410_qony.t1 231 NLERRNnNETLAVNLVFHLSSLN-NTSN----ISETMTVIHSLNPSVVVLVEREGSHHQKtsssscRILSNYVDSLHYYAAMFDSLDDCLPL 317 9988877**********999997.3333....4579******************9995555778888999********************** PP GRAS 278 eseerikvErellgreivnv.vacegaerre.....rhetlekWrerleeaGFkpvplsekaakqaklllrk 343 es er ++E+ lgrei+++ +ac +++ e + e +e+W+er++ GF+ + ls+k++ qakll+++ Sp_104410_qony.t1 318 ESAERLSIEKNHLGREIKDLiIACDEDDDDEvkclsKFEVMETWKERMMCHGFEGIVLSSKVTIQAKLLMKM 389 ******************96268888876653333356999***************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.41 | 1 | 400 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-69 | 55 | 389 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MNEDVLSLSL STVSHSTHVE RRINNSHLLI NSDDNWELKI FRLFEERQRM LNMNMKIEQK 60 SSVTGDSGQR VAAYFADGLS ARLLTQKSAF YYTQKSAFYY NMVMNKPTPA EEFMAFTHLN 120 RVSPFYQFAH FTANQAILEA FEGEEETNNW CLHVIDYDVS HGFQWPSLMQ SLSEMAANDA 180 NHRVVSLCIT GLAKSLEELI GTENRLVSFS KIFHNIAFEF HGLLKGSKLK NLERRNNNET 240 LAVNLVFHLS SLNNTSNISE TMTVIHSLNP SVVVLVEREG SHHQKTSSSS CRILSNYVDS 300 LHYYAAMFDS LDDCLPLESA ERLSIEKNHL GREIKDLIIA CDEDDDDEVK CLSKFEVMET 360 WKERMMCHGF EGIVLSSKVT IQAKLLMKMG CHYHPRFEGG DAGGGSGGGG GGGGGGFRVY 420 ERDCGMGISL GWQDRFLITA SAWRCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-51 | 44 | 443 | 35 | 378 | Protein SCARECROW |
5b3h_A | 4e-51 | 44 | 443 | 34 | 377 | Protein SCARECROW |
5b3h_D | 4e-51 | 44 | 443 | 34 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849549.1 | 0.0 | protein SCARECROW-like isoform X2 | ||||
TrEMBL | A0A0K9R7F1 | 0.0 | A0A0K9R7F1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675505.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-49 | GRAS family protein |