PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_104020_dmho.t1
Common NameSOVF_104020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 345aa    MW: 39028.2 Da    PI: 6.6138
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_104020_dmho.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.1e-32211266156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k r++W+peLH+rF++a+e+LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sp_104020_dmho.t1 211 KRRRCWSPELHRRFIDALEKLGGPQVATPKNIRELMKVDGLTNDEVKSHLQKYRLH 266
                        689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.61E-17208269IPR009057Homeodomain-like
PROSITE profilePS5129417.232208268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28209269IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-27211266IPR006447Myb domain, plants
PfamPF002494.0E-8213264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMSSDFPQLS LDLSLPILPI SSPFHEILTR FLIARISNSS ELSKLYDFIN GLEDELKKIQ  60
AFQRELPLSF NILNDANNML KDVVKKNEGK RWDGKIDESV GVKLGIDEFE KKTWMSSVQL  120
WSKTNEGGGD YEPRKYEERG PRGTVLSFEK ATEDVTGLSL VTPGSNNPTV DEPGLEKLLT  180
GGMLSGPGFS IIKDKKDKFE TKLLPYQTAR KRRRCWSPEL HRRFIDALEK LGGPQVATPK  240
NIRELMKVDG LTNDEVKSHL QKYRLHVQKH PTGSITTTRL SAEVGMDHSE EQLELGCSTM  300
DLQHSSSPKG PFHLKGSRKC NSSSMEEDEE EEKSDGQSWK VQHYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13211264154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13211264255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209213RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857919.10.0transcription factor HHO5-like
TrEMBLA0A0K9R7610.0A0A0K9R761_SPIOL; Uncharacterized protein
STRINGXP_010680444.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.16e-49G2-like family protein