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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_101380_kier.t1 | ||||||||
Common Name | SOVF_101380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WOX | ||||||||
Protein Properties | Length: 451aa MW: 48838.9 Da PI: 7.3985 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1.1e-17 | 62 | 122 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Sp_101380_kier.t1 62 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 122 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.6 | 2.1e-36 | 61 | 124 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq Sp_101380_kier.t1 61 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 124 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-12 | 58 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.398 | 58 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-9 | 60 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-7 | 61 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.34E-9 | 61 | 124 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 62 | 122 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNNQ QWSQNHDTNH QQSSLLSNSC GRSSSSNSPF SSGCEERTPE 60 PKPRWNPKPE QIRILEAIFN SGMVNPPRDE IRRIRAQLQE YGQVGDANVF YWFQNRKSRS 120 KHKQRTLQAK ITATAATITN NTTVGIHHNS PPQPMPTSSS SSSSEKASPR EVTLSRSGGG 180 SSSYGGGGSS SNNSGNVVVD QFGNSPTSVN QCNPYFQQLV APNHHHSTTT HEFVSQDPLF 240 FPLHQSGANF SQGLCYNDQH HQHQLMNSTT AVTIHVPPSS DQATAGGFSS LLLGDMFGGD 300 HSKRDHEVDK FKFQQELSFL VTSAPNTTTC TISSSSPIVH TPTSTAISSN LGQMLGVGEA 360 GGLAGKSTVF INGMAFELPV GPFNVKEEFG EDVLLIHSAS GHQVLTNEWG VTLHPLQHGA 420 SYFLVGCGAA SPLLHKLDSN PDLLAPGFPY Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021853682.1 | 0.0 | WUSCHEL-related homeobox 9-like | ||||
TrEMBL | A0A0K9R8K3 | 0.0 | A0A0K9R8K3_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010686367.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-50 | homeobox-3 |