PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GATA

Protein Properties

Length: 303aa MW: 33439.9 Da PI: 6.9189

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_099700_tdca.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.7	2.1e-15	218	254	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl + k++ Sp_099700_tdca.t1 218 CTHCGISSlsTPMMRRGPNGPRTLCNACGLVWGNKRT 254 ***99999********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	5.6E-11	77	112	IPR010399	Tify domain
PROSITE profile	PS51320	14.485	77	112	IPR010399	Tify domain
Pfam	PF06200	7.5E-12	80	111	IPR010399	Tify domain
Pfam	PF06203	2.4E-15	151	193	IPR010402	CCT domain
PROSITE profile	PS51017	13.344	151	193	IPR010402	CCT domain
PROSITE profile	PS50114	9.578	212	270	IPR000679	Zinc finger, GATA-type
SMART	SM00401	6.3E-13	212	265	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.03E-12	213	264	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.5E-14	216	259	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.20E-14	217	267	No hit	No description
Pfam	PF00320	5.3E-13	218	254	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	218	245	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYPHEQHLSV SPSSPSQLQE SQALIEQNDI VQRVGDSVDD HYQHNHHHHH HGQHRCSDDG 60 PVAFEGDSIY AVDNYGRVEG SDQLTLSFRG QVYVFDSVTP DKVEAVLLVL GGNVGGSAPT 120 PASQGAEASH VAHMSQQDMM VYPGRSSLPQ REASLNRYRR KRNERTFDKL IRYNVRQEVA 180 QRQPRSKGQF TSSKKGGESS GCNAQDSGPD ETQLETSCTH CGISSLSTPM MRRGPNGPRT 240 LCNACGLVWG NKRTLRDLSK KQDPYVMPNE LTGASPFRAT DILGEAKYVN FGENDSPALI 300 AQH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854877.1	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	4e-65	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A0K9R6Z5	0.0	A0A0K9R6Z5_SPIOL; Uncharacterized protein
STRING	XP_010671518.1	1e-175	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-62	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]