PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_099080_miwo.t1

Common Name

SOVF_099080

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 447aa MW: 49445.6 Da PI: 5.3211

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_099080_miwo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	106	165	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sp_099080_miwo.t1 106 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKSS 165 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	103	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MMDPAIKLFG KTIPVIGDEE SPRYESTNES SNSELHDVDD KDFTEDKMEI IQSDDPAPPS 60 EEDSTNPQIT SNTDDNDNDK ASDSEEMDEK DSNDQKNSQQ KTLKKPDKIL PCPRCNSMDT 120 KFCYYNNYNV NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKSSAPRYC HITVSEALQA 180 ARLDGPNGIH HPGLKPNGTV LTFGPDNPLC DSMLNIGDKK VLNGTNATTT RNGFHDIDQV 240 VRRSKENGDD RSCGSTVTTT SSMDDKAKAG PQQNLNGFTN QMPCYQWPYV WNPAVPVPPF 300 CPSAFPPMPF YPPPYWNGAM PWNFPWNFPT QSSPGSNSNS PTLGKHTRDG EMVNQSENER 360 SLGTSTVLVP KTLRIDDPDE AAKSSIWTTL GIKKGDSKSK GGGFFNSLQQ SKKVVDNSNS 420 HNIMDASPEL QANPAALQRS MNFQESA

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MMDPAIKLFG KTIPVIGDEE SPRYESTNES SNSELHDVDD KDFTEDKMEI IQSDDPAPPS  60
EEDSTNPQIT SNTDDNDNDK ASDSEEMDEK DSNDQKNSQQ KTLKKPDKIL PCPRCNSMDT  120
KFCYYNNYNV NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKSSAPRYC HITVSEALQA  180
ARLDGPNGIH HPGLKPNGTV LTFGPDNPLC DSMLNIGDKK VLNGTNATTT RNGFHDIDQV  240
VRRSKENGDD RSCGSTVTTT SSMDDKAKAG PQQNLNGFTN QMPCYQWPYV WNPAVPVPPF  300
CPSAFPPMPF YPPPYWNGAM PWNFPWNFPT QSSPGSNSNS PTLGKHTRDG EMVNQSENER  360
SLGTSTVLVP KTLRIDDPDE AAKSSIWTTL GIKKGDSKSK GGGFFNSLQQ SKKVVDNSNS  420
HNIMDASPEL QANPAALQRS MNFQESA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860427.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-107	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0K9R752	0.0	A0A0K9R752_SPIOL; Uncharacterized protein
STRING	XP_010678503.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-98	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]