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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sp_098330_tssz.t1 |
| Common Name | SOVF_098330 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 25832.4 Da PI: 5.1051 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_098330_tssz.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krie+ks rqvtfskRr g++KKA ELS+LCd++vav++fs++g+lye+
Sp_098330_tssz.t1 9 KRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSHRGRLYEFV 58
79***********************************************7 PP
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| 2 | K-box | 54.8 | 4e-19 | 106 | 174 | 31 | 99 |
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++ R G ++e+Lsl++ +qLe+qL+++l + R++K +l+le++ +l++kek+l +en +L+ +++
Sp_098330_tssz.t1 106 VKTVERYAEGSGIENLSLEDFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVA 174
456678899*******************************************************99886 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.572 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.19E-36 | 2 | 83 | No hit | No description |
| SuperFamily | SSF55455 | 7.98E-29 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 9.63 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.8E-15 | 106 | 173 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MGRRKIEMKR IEDKSSRQVT FSKRRSGLIK KARELSILCD VDVAVLVFSH RGRLYEFVSG 60
ASSSSSLSQI LRRYQDSTDG KASNVDDETE DSPSTCIQVQ TCGELVKTVE RYAEGSGIEN 120
LSLEDFMQLE KQLNDALVQT RNRKAQLMLE SVATLREKEK MLTQENDQLK DEVAKVKGNL 180
NRGNRTDLEL NGVMEEGALI QCPEPVRTLP LLIEEGECPE PVKTLPLLW
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 5e-17 | 1 | 88 | 1 | 83 | MEF2C |
| 5f28_B | 5e-17 | 1 | 88 | 1 | 83 | MEF2C |
| 5f28_C | 5e-17 | 1 | 88 | 1 | 83 | MEF2C |
| 5f28_D | 5e-17 | 1 | 88 | 1 | 83 | MEF2C |
| 6c9l_A | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 4e-17 | 1 | 88 | 1 | 83 | Myocyte-specific enhancer factor 2B |
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