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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sp_096440_sqha.t1 | ||||||||
| Common Name | SOVF_096440 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | MYB | ||||||||
| Protein Properties | Length: 1046aa MW: 118921 Da PI: 8.1528 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 32 | 2.9e-10 | 463 | 508 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r++WT Ed+ l+ ++++ G ++W+ Ia+++ ++Rt+ qc r+q
Sp_096440_sqha.t1 463 RDNWTSNEDKHLLLLIQKNGIHNWSYIAQKLETNRTPFQCLARYQR 508
789*****************************************96 PP
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| 2 | Myb_DNA-binding | 43.6 | 6.9e-14 | 517 | 562 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT++Ed +l av+ +G +W ++a+ + gRt+ qc +rw+k l
Sp_096440_sqha.t1 517 REWTEDEDAQLRSAVESFGESNWQAVASVLE-GRTGTQCSNRWNKTL 562
68*****************************.************975 PP
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| 3 | Myb_DNA-binding | 45.6 | 1.6e-14 | 570 | 615 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g+W+ Ed++l av+++G ++W++Ia+ ++ gRt qc++rw ++l
Sp_096440_sqha.t1 570 GKWSINEDKRLRVAVTLFGHKSWHRIAQFVP-GRTQAQCRERWVNVL 615
79*****************************.***********9975 PP
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| 4 | Myb_DNA-binding | 49.2 | 1.2e-15 | 621 | 665 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg WT+e+d +l+ a++++G W+++a +++ Rt++qc+ rw +
Sp_096440_sqha.t1 621 RGQWTEEDDMKLKAAIAEHGYC-WSKVAVCIP-LRTDNQCRRRWKRL 665
89******************99.*********.9**********875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00717 | 25 | 346 | 459 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 349 | 365 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 4.542 | 411 | 457 | IPR017877 | Myb-like domain |
| Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 412 | 470 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 9.98E-16 | 440 | 508 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 9.512 | 462 | 510 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 5.0E-6 | 462 | 512 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.5E-7 | 463 | 508 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-14 | 471 | 517 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 5.53E-19 | 496 | 562 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 20.283 | 511 | 566 | IPR017930 | Myb domain |
| SMART | SM00717 | 9.1E-14 | 515 | 564 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 5.7E-13 | 517 | 561 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.2E-17 | 518 | 565 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.16E-11 | 518 | 562 | No hit | No description |
| SuperFamily | SSF46689 | 7.7E-25 | 566 | 662 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.371 | 567 | 615 | IPR017930 | Myb domain |
| SMART | SM00717 | 4.4E-11 | 568 | 617 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 4.7E-13 | 570 | 615 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 8.5E-20 | 570 | 620 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.15E-9 | 571 | 615 | No hit | No description |
| PROSITE profile | PS51294 | 20.586 | 616 | 670 | IPR017930 | Myb domain |
| SMART | SM00717 | 7.3E-15 | 620 | 668 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 8.7E-18 | 621 | 665 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 4.0E-14 | 621 | 665 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 7.48E-12 | 624 | 666 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1046 aa Download sequence Send to blast |
PLSYTFPLVG RCSALRPPPS AFRLQSPILS LPNSVEGFSM GRYDFEEELS DSDPDDDFLQ 60 HEIQALSKAC MPPPPPTTTP TSDGGSTAAA TVNPSTAYDD KEFPDDDDDD DDLELVRSIK 120 EQYGYVGDIN QPLSLKPLTT LPPVLSDDDE DDFETLRAIQ RRFSQYCGSN DAGGDADVTK 180 NKDDTCVDES LQNDAVDTSL GSELLDVHGD DFGRDTYDAA ENVENVENSS FPSSAQTFME 240 AIKKNRSCQK FLRNKMLHVE ARMEEIKELQ KRLKTLRDFQ VQCKKKIGRA LSQKQDARVQ 300 LISVPKQRAN KKGSEKNVSA MNYGPLENSH VALYKTAMKD FPLSFRREKW SKVENQSLKK 360 EIIKQFQERV FDKSADVISA LEEPGFDNGV DGMISSITNL DITPEIIQDF LGKVDWNKLA 420 SRLEEERFPR RLTAECEEER VPRRLAAECE ARWLNSENCL INRDNWTSNE DKHLLLLIQK 480 NGIHNWSYIA QKLETNRTPF QCLARYQRSL NASILKREWT EDEDAQLRSA VESFGESNWQ 540 AVASVLEGRT GTQCSNRWNK TLLPARQKVG KWSINEDKRL RVAVTLFGHK SWHRIAQFVP 600 GRTQAQCRER WVNVLDPCLN RGQWTEEDDM KLKAAIAEHG YCWSKVAVCI PLRTDNQCRR 660 RWKRLFPNEV LLLKAAKDIK KAALISNFVD RESERPTLGA DDFVPLRITD SANNHEKENV 720 PQARNKSRSR KRKRCDGSTG LDDKRSKSGY DALENKKRKA IRSGSKTVKQ TGNRNLSTES 780 KKSCESTESN ENRELETWDE PIRVRSRRPR RVRLKEIPAI SHSGVSQAAG VPDTTMNMTT 840 LVHCANHGNI LDVLHGQSTS DSQLRIPEET VKGSNIITYK RKKRSSKLPP GRNVSADTTL 900 VDNCEAMEFQ SRNDGKETHF MDAAGSNKES SVKRQNRSRL HLDQSVEWED LPLVTMINNK 960 RSSKLQPRRS FLTKTTLGDS NCGEMELRTC NDGNEAHSMD AAVSSKENNV KQQKKSRLHR 1020 NQSVEWEDLP LAVLHRKTVT RIQKRI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 3e-27 | 441 | 662 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-27 | 441 | 662 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021858427.1 | 0.0 | uncharacterized protein LOC110797633 | ||||
| Refseq | XP_021858428.1 | 0.0 | uncharacterized protein LOC110797633 | ||||
| Refseq | XP_021858429.1 | 0.0 | uncharacterized protein LOC110797633 | ||||
| Refseq | XP_021858430.1 | 0.0 | uncharacterized protein LOC110797633 | ||||
| TrEMBL | A0A0K9R9D0 | 0.0 | A0A0K9R9D0_SPIOL; Uncharacterized protein (Fragment) | ||||
| STRING | XP_010674389.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18100.1 | 1e-166 | myb domain protein 4r1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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