PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_093040_dmds.t1
Common NameSOVF_093040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HB-other
Protein Properties Length: 385aa    MW: 42553.3 Da    PI: 4.4038
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_093040_dmds.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.89.9e-10313360653
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        +++k q+e+Le+++++++ p+ ++   + + ++L+ r+V  WF  +Ra
  Sp_093040_dmds.t1 313 RLKKVQVETLENVYKRTKRPTNAMVSSIVHVTNLPRRRVVKWFEDKRA 360
                        67899******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.912305365IPR001356Homeobox domain
CDDcd000865.93E-8308360No hitNo description
SuperFamilySSF466891.28E-9309363IPR009057Homeodomain-like
SMARTSM003891.3E-4311369IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-9312361IPR009057Homeodomain-like
PfamPF000463.1E-7313360IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSFTIHNNSS SVTLSSLPSS SSSQFHTKYI FSRNPKTSFL SLPRVPISHS VLCLARRRSN  60
SGRPATASSK KNKGRKKEDS NKGDDLDGDA FEALFKLLEE DLKQDEELLG DGDDEISEEE  120
LALLERELEE ALAEDENMSA LLSLTAKDAV EGKGAEEETK NEVGEDGVGV GVDDDDDDDD  180
DEEEEEEEEE PVQLKGWQLR RLAQALKVGR RKTSIKNLAA ELGLDRAVVL ELLREPPLNL  240
LMMSAALPDK PEPAVMIPGA ADVSSVPSEV IADSAESDVS SVSFEVIADA EEPEPVVKTP  300
IHTLQDSWSS QKRLKKVQVE TLENVYKRTK RPTNAMVSSI VHVTNLPRRR VVKWFEDKRA  360
DEGVPADPAQ QRPYRRSSSE SVFAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737964.11e-153protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A0K9RB510.0A0A0K9RB51_SPIOL; Uncharacterized protein
STRINGXP_010670653.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-47overexpressor of cationic peroxidase 3