PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_092940_qpgn.t1 | ||||||||
Common Name | SOVF_092940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21316.5 Da PI: 7.9101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 0.0001 | 1 | 36 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +N+ + Lr+l P + kK + a+i +ve+Ik+L Sp_092940_qpgn.t1 1 MNDHLKILRSLTPCF---YIKKGDQASIIGGVVEFIKEL 36 8*************9...9******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-5 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-5 | 1 | 41 | No hit | No description |
PROSITE profile | PS50888 | 10.506 | 1 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-8 | 1 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MNDHLKILRS LTPCFYIKKG DQASIIGGVV EFIKELHQVL QSLESQKRRK SLSPSPGPSP 60 KQLQQPSPSP RQLANANIIG NHSFQFDGGK ELVASCNSPV ADVEAKISGC NVVLRVISKR 120 SHGQLLRIIT TLEKLSFEVL HLNISSMDDT VLYYFVVKIG LECELSMEEL AAEVQRSFCT 180 NHTITNNNIT EI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021857748.1 | 1e-140 | transcription factor MUTE | ||||
Swissprot | Q9M8K6 | 3e-73 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A0K9RA73 | 1e-139 | A0A0K9RA73_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693896.1 | 1e-107 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06120.1 | 4e-65 | bHLH family protein |