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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sp_092700_ujtc.t1 |
Common Name | SOVF_092700 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family |
ERF |
Protein Properties |
Length: 306aa MW: 34654.5 Da PI: 4.9987 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sp_092700_ujtc.t1 | genome | TBVR | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 68 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++ ++k++g
Sp_092700_ujtc.t1 68 TQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDKEARKIRG 118
58********.**********954...4*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0034059 | Biological Process | response to anoxia |
GO:0071456 | Biological Process | cellular response to hypoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MCGGAILADL IPRNQGRYTS GSDFWPDAFF STSDNFTKQV SNRPTKRPLS YSSGGVQLEK 60 RPKKQRKTQY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TPEEAARAYD KEARKIRGKK 120 AKVNFPNEEE DSFTNHPQFF PAPLYQQQNQ QQFNNILQPE NQILDYPTTD YMNQNLHVSS 180 NGLALNQESS NGYSLESAYV APNLMGIATT NQMKDEVNQS SSGKVAPVSM TGERAAIVLA 240 EEREEEAESE VQKLSEELMA YENYMKFYEI PYMEGQSATV APPLCSCQEG NATLELWSFD 300 EDVPST
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX477785 | 8e-56 | JX477785.1 Agriophyllum squarrosum clone As14 microsatellite sequence. |