PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_092640_iogy.t1
Common NameSOVF_092640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 300aa    MW: 32831.4 Da    PI: 7.2253
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_092640_iogy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09114162351
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         +kr r +  NReA r++Rq+Kka  + Le++v +L + N++L k+l+ 
  Sp_092640_iogy.t1 114 TRKRGRERGGNREAVRKYRQKKKAHAASLEDEVVKLRTLNQQLLKRLQG 162
                        6788899999**********************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-9108179IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-12110180No hitNo description
PROSITE profilePS502178.783114161IPR004827Basic-leucine zipper domain
CDDcd146863.12E-12115171No hitNo description
SuperFamilySSF579593.75E-7116161No hitNo description
PfamPF077161.2E-11117161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMEDNNQIKC NNNNSSNRNR VPLMDDGELE FSNQELLSSA NIGEIPSSGS MDSFFDELLR  60
DTHACTHTHT CNPPGPDLSH THTCFHVHTK ILPPSSEEKS GNNDDSAESG EHRTRKRGRE  120
RGGNREAVRK YRQKKKAHAA SLEDEVVKLR TLNQQLLKRL QGQAVLEAEI ARLKCLLVDI  180
RGRIEGEIGS FPYQRPVKSG DMYQNIANTN LPGSYMIPCN AGQCGDQIYC LHPGSDGKAG  240
EGAALNGQDL NGCDYENCMA SLGSAPKDLF SCGTNATTTG GSSGNTRRKR TRPLTSPTQP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851974.10.0basic leucine zipper 23-like
SwissprotQ8GTS23e-93BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0K9R9690.0A0A0K9R969_SPIOL; Uncharacterized protein
STRINGXP_010690366.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.19e-85bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]