PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_092570_ctak.t1

Common Name

SOVF_092570

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SRS

Protein Properties

Length: 428aa MW: 46442.3 Da PI: 8.0849

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_092570_ctak.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.6	3.8e-69	187	354	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..............aeaaskrkrel. 78 +sg+++CqdCGnqakkdC+h RCRtCCksrgfdC+thvkstWvpaakrrerqqql++++ ++++++ + +kr+re+ Sp_092570_ctak.t1 187 GSGGMNCQDCGNQAKKDCVHLRCRTCCKSRGFDCSTHVKSTWVPAAKRRERQQQLTSLQPQQQQQQqqqtqqmmrssggfGSGGEKRTRENr 278 5799**************************************************999888887745556666666655444444444443 PP DUF702 79 kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s++ a ++t+++++++ le+ ++P+e++s+avfrcvrvs++dd +e++aYqtav+igGh+fkGiLydqG+e+ Sp_092570_ctak.t1 279 SSSRVLAHAATTTTTTTTAAGLEVGDFPSELNSPAVFRCVRVSALDDPDEQFAYQTAVNIGGHIFKGILYDQGPET 354 44555566777778888888999999**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-66	190	353	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	192	234	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.5E-26	305	352	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MAAFFSLGTP GSSGSQNPQN NNNNNNNNSN NNNNTSSVPS DNQVQNSWVH TSNNNNNPGL 60 VVYSRNNSEE IYPKGSFEIW QQYVQVHHHH HVPKLHLHQD YHHHHHHQHQ HQQHVFLGES 120 QPSVVVGPSS AAPSSRRIFG FDEYPNNNDN NSNNNNNNNN NTVLSSGSGS GRSSSGFRQL 180 GVGSGSGSGG MNCQDCGNQA KKDCVHLRCR TCCKSRGFDC STHVKSTWVP AAKRRERQQQ 240 LTSLQPQQQQ QQQQQTQQMM RSSGGFGSGG EKRTRENRSS SRVLAHAATT TTTTTTAAGL 300 EVGDFPSELN SPAVFRCVRV SALDDPDEQF AYQTAVNIGG HIFKGILYDQ GPETRYGGES 360 SSEGRAQQHG LMLPAATTTT DLMGTVGGGS INNATTASLL DPMGTSTIYP APINAFLAGT 420 QFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MAAFFSLGTP GSSGSQNPQN NNNNNNNNSN NNNNTSSVPS DNQVQNSWVH TSNNNNNPGL  60
VVYSRNNSEE IYPKGSFEIW QQYVQVHHHH HVPKLHLHQD YHHHHHHQHQ HQQHVFLGES  120
QPSVVVGPSS AAPSSRRIFG FDEYPNNNDN NSNNNNNNNN NTVLSSGSGS GRSSSGFRQL  180
GVGSGSGSGG MNCQDCGNQA KKDCVHLRCR TCCKSRGFDC STHVKSTWVP AAKRRERQQQ  240
LTSLQPQQQQ QQQQQTQQMM RSSGGFGSGG EKRTRENRSS SRVLAHAATT TTTTTTAAGL  300
EVGDFPSELN SPAVFRCVRV SALDDPDEQF AYQTAVNIGG HIFKGILYDQ GPETRYGGES  360
SSEGRAQQHG LMLPAATTTT DLMGTVGGGS INNATTASLL DPMGTSTIYP APINAFLAGT  420
QFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862466.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	5e-74	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0K9R941	0.0	A0A0K9R941_SPIOL; Uncharacterized protein
STRING	XP_010672367.1	1e-109	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-65	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]